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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 337.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 227.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 319.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 372.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 313.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 354
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 266.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 225.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 405.0
Min RPKM: 24.1
Std RPKM: 53.5
Median RPKM: 141.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
405.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
317.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
293.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
277.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
262.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
250.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
246.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
237.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
235.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
230.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
227.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
224.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
219.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
218.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
217.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
216.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
214.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
213.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
206.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
202.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
201.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
193.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
191.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
187.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
185.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
183.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
182.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
180.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
180.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
179.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
175.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
173.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
171.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
167.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
165.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
163.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
162.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
161.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
160.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
157.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
156.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
155.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
155.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
155.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
155.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
152.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
150.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
148.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
148.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
147.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
147.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
146.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
145.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
145.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
144.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
142.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
142.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
141.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
141.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
141.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
137.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
137.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
137.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
137.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
136.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
136.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
134.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
134.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
134.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
134.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
133.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
132.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
131.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
130.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
130.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
129.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
128.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
128.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
128.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
128.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
127.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
126.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
122.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
121.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
118.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
117.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
117.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
117.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
115.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
115.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
114.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
113.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
112.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
112.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
111.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
111.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
111.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
110.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
109.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
109.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
108.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
108.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
107.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
101.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
100.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
99.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
99.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
98.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
96.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
95.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
94.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
94.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
93.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
92.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
91.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
91.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
86.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
85.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
24.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.