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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 114.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 233.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 108.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 202.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 138
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 100.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 140.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 294.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 104.6
Min RPKM: 3.5
Std RPKM: 20.4
Median RPKM: 38.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
104.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
82.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
81.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
80.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
77.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
75.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
74.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
73.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
72.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
72.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
67.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
66.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
66.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
66.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
66.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
65.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
64.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
62.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
62.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
62.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
62.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
61.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
60.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
60.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
60.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
59.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
58.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
57.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
56.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
56.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
55.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
55.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
54.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
53.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
53.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
52.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
52.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
52.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
50.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
50.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
50.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
50.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
50.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
48.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
48.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
48.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
47.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
46.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
46.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
45.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
43.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
43.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
42.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
42.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
40.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
39.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
39.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
39.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
39.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
38.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
38.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
38.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
38.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
37.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
37.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
36.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
36.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
36.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
36.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
36.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
36.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
36.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
34.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
34.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
34.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
34.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
34.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
33.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
33.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
33.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
32.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
31.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
29.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
29.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
28.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
26.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
25.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
25.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
25.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
24.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
24.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
24.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
23.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
23.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
23.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
21.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
20.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
20.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
19.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
18.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
17.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
17.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
17.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
16.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
14.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
14.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
14.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
12.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
12.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
11.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
10.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
10.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
10.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
10.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
8.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
8.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
6.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
5.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
