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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 8.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 9.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 6.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 8.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 6.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 5.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 7.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 9.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4.8
Min RPKM: 1.1
Std RPKM: 0.7
Median RPKM: 3.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
4.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
4.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
4.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
4.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
4.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
4.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
4.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
4.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
4.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
4.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
4.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
4.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
4.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
4.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
4.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
3.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
3.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
3.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
3.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
3.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
3.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
3.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
3.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
3.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
3.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
3.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
3.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
3.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
3.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
3.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
3.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
3.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
3.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
3.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
3.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
3.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
3.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
3.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
3.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
3.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
3.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
3.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
3.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
3.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
3.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
3.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
3.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
3.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
3.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
3.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
3.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
3.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
3.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
3.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
3.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
3.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
3.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
3.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
2.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
2.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
2.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
2.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
2.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
2.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
2.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
2.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
2.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
2.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
2.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
2.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
2.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
2.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
2.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
2.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
2.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
2.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
2.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
2.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
2.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
2.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
2.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
2.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
2.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
2.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
2.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
2.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
2.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
2.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
2.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
2.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
2.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
2.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
2.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
2.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
2.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
2.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
2.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
2.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
1.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
