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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 45.9
Min RPKM: 9.4
Std RPKM: 8.2
Median RPKM: 23.9
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
45.9
GTEX-X261-2426-SM-4PQZU
50-59 years, male
40.8
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
39.3
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
38.2
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
37.9
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
36.6
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
34.5
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
34.2
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
33.7
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
33.6
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
31.4
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
31.1
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
30.5
GTEX-13113-1526-SM-5EGHV
60-69 years, female
30.1
GTEX-13O21-1926-SM-5MR39
50-59 years, male
30.0
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
28.9
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
28.4
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
28.1
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
27.8
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
26.7
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
25.9
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
25.8
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
25.6
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
25.5
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
25.2
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
25.2
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
25.2
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
24.9
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
23.9
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
23.3
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
23.2
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
22.9
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
22.6
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
22.6
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
22.0
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
21.9
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
21.7
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
21.1
GTEX-11P82-0926-SM-5986X
20-29 years, male
20.1
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
19.1
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
18.7
GTEX-1445S-2926-SM-5O993
60-69 years, male
18.3
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
18.3
GTEX-Y111-2626-SM-4TT24
50-59 years, male
18.3
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
17.1
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
16.9
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
15.9
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
15.6
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
14.7
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
14.5
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
14.2
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
13.2
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
12.6
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
12.5
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
12.4
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
9.9
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
9.4
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.