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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 125549
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 127458
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 117022
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 117769
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 114229
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 89008.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 96459
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 90848.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 46363.6
Min RPKM: 2373.4
Std RPKM: 8223.5
Median RPKM: 14750.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
46363.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
40402.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
37956.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
36429.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
34073.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
33949.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
33689.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
33082.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
30448.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
28023.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
27912.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
27779.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
27277.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
26715.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
25613.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
25338.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
25041.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
24429.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
23805.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
22186.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
21987.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
21946.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
21861.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
21718.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
21601.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
20570.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
20565.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
20433.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
20308.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
19913.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
19434.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
19115.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
18378.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
18337.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
17777.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
17626.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
17606.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
17542.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
17266.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
17202.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
17180.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
17174.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
16712.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
16532.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
16440.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
16399.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
16145.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
16066.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
15934.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
15731.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
15457.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
15419.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
15418.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
15374.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
15234.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
15153.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
14934.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
14861.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
14821.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
14750.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
14712.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
14539.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
14537.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
14237.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
14004.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
13940.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
13898.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
13647.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
13420.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
13061.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
13006.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
12847.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
12834.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
12781.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
12683.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
12652.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
12555.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
12443.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
12355.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
12210.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
12056.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
11999.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
11942.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
11929.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
11858.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
11285.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
11067.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
10863.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
10451.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
10347.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
10173.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
10019.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
9873.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
9528.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
9360.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
9326.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
8997.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
8992.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
8914.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
8706.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
8416.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
8146.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
7752.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
7438.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
6950.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
6903.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
6656.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
6629.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
6559.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
6472.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
6443.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
6437.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
5715.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
5643.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
5146.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
4628.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
3444.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
3083.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2373.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.