We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 10827.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 3683.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 3997.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6059
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 6678.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 5518.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3435.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 7403
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1315.1
Min RPKM: 10.8
Std RPKM: 231.3
Median RPKM: 415.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1315.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1120.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1088.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
989.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
931.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
907.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
796.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
778.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
773.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
772.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
754.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
751.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
736.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
710.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
704.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
699.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
674.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
668.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
614.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
602.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
595.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
595.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
584.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
576.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
575.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
572.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
568.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
562.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
544.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
536.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
535.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
520.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
519.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
518.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
509.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
501.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
498.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
498.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
496.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
494.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
491.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
491.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
491.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
489.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
486.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
479.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
468.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
465.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
456.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
453.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
452.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
451.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
450.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
446.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
442.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
440.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
434.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
425.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
423.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
415.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
413.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
407.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
403.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
394.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
385.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
377.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
377.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
375.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
370.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
370.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
364.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
362.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
362.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
358.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
355.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
346.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
346.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
343.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
341.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
339.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
328.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
316.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
315.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
309.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
303.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
299.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
295.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
285.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
274.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
267.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
262.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
261.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
250.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
246.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
243.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
238.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
237.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
235.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
232.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
226.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
219.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
217.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
217.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
211.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
205.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
163.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
150.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
132.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
130.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
130.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
127.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
124.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
121.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
107.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
67.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
58.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
57.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
21.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
10.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.