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COLON - Expression summary
RNA expressioni
HPA:21.0TPM
GTEx:10.6RPKM
FANTOM5:52.2Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 21.0
overview Male, age 54 Sample 1
TPM: 25.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 27.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 20.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 31.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 31
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 28.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 21.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 10.6
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 0.4
Samples: 149

Max RPKM: 8.4
Min RPKM: 0.0
Std RPKM: 1.2
Median RPKM: 0.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 8.4
GTEX-V955-1726-SM-4JBHF 60-69 years, male 7.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 7.1
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 6.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 3.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 3.2
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 2.8
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 2.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 1.4
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 1.3
Show all
Colon - Transverse
RPKM: 18.5
Samples: 196

Max RPKM: 56.3
Min RPKM: 0.0
Std RPKM: 14.3
Median RPKM: 20.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 56.3
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 46.8
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 44.9
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 44.8
GTEX-14DAR-1526-SM-5RQIX 50-59 years, male 43.0
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 42.1
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 42.1
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 41.2
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 39.9
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 38.4
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 52.2
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 126.5
FF:10014-101C5 62,83,84 years, mixed 52.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.