Fields »
ABOUTMENU
HELP
NEWS
SSR2
COLON - Expression summary
RNA expressioni
HPA:184.3TPM
GTEx:61.7RPKM
FANTOM5:204.1Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 184.3
overview Male, age 54 Sample 1
TPM: 161.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 136.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 139.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 116
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 147.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 221.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 275.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 202.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 193
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 213.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 227.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 207.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 154.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 61.7
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 58.4
Samples: 149

Max RPKM: 96.3
Min RPKM: 37.5
Std RPKM: 10.5
Median RPKM: 57.1
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 96.3
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 89.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 84.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 82.7
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 80.9
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 79.0
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 78.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 77.1
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 74.5
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 73.9
Show all
Colon - Transverse
RPKM: 64.3
Samples: 196

Max RPKM: 118.6
Min RPKM: 33.0
Std RPKM: 12.7
Median RPKM: 62.5
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 118.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 117.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 107.4
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 99.5
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 91.6
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 88.5
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 88.4
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 88.0
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 87.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 87.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 204.1
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 176.5
FF:10014-101C5 62,83,84 years, mixed 204.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.