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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 713.7
Min RPKM: 32.0
Std RPKM: 149.4
Median RPKM: 251.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
713.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
649.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
574.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
574.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
554.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
541.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
530.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
505.1
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
497.8
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
491.8
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
479.4
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
475.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
441.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
433.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
422.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
421.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
418.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
415.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
411.2
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
397.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
396.9
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
395.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
394.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
392.0
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
378.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
364.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
358.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
345.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
338.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
333.9
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
330.0
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
324.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
315.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
295.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
290.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
289.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
287.6
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
282.8
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
277.8
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
277.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
274.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
270.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
269.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
268.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
266.2
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
259.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
255.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
255.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
247.4
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
244.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
238.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
230.1
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
226.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
223.1
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
218.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
212.9
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
206.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
205.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
198.6
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
186.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
182.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
180.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
178.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
177.8
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
173.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
171.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
170.3
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
168.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
163.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
162.8
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
162.0
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
157.3
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
153.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
150.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
143.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
142.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
141.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
135.9
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
133.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
132.4
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
119.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
118.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
115.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
112.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
110.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
97.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
88.0
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
84.4
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
78.5
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
76.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
73.9
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
65.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
63.2
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
58.4
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
36.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
32.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.