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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in tubules: 60 Cells in glomeruli: 20 Fibroblasts: 5 Other cell types: 15
Female, age 67
Sample 2 TPM: 7.2
Cell types%
Cells in tubules: 70 Cells in glomeruli: 15 Fibroblasts: 10 Other cell types: 5
Female, age 55
Sample 3 TPM: 13
Cell types%
Cells in tubules: 80 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 5
Male, age 46
Sample 4 TPM: 5.8
Cell types%
Cells in tubules: 60 Cells in glomeruli: 25 Fibroblasts: 5 Other cell types: 10
Female, age 57
Sample 5 TPM: 13.1
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 6 TPM: 10.5
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 20
Male, age 73
Sample 7 TPM: 7.3
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Female, age 59
Sample 8 TPM: 16.6
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 15
Female, age 48
Sample 9 TPM: 22.2
Cell types%
Cells in tubules: 60 Cells in glomeruli: 5 Fibroblasts: 10 Other cell types: 25
KIDNEY - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 5.1
Min RPKM: 0.2
Std RPKM: 1.1
Median RPKM: 2.2
GTEX-ZYT6-2226-SM-5GIC9
30-39 years, male
5.1
GTEX-RN64-1626-SM-48FD7
50-59 years, male
4.3
GTEX-ZYFG-1626-SM-5GZYY
60-69 years, female
4.3
GTEX-145MN-0326-SM-5QGQI
30-39 years, male
4.2
GTEX-13OVL-1826-SM-5KLZR
50-59 years, male
3.6
GTEX-UPIC-1126-SM-4IHLO
20-29 years, female
3.5
GTEX-147F4-2626-SM-5Q5CS
50-59 years, male
3.4
GTEX-ZLFU-0926-SM-5P9F8
40-49 years, male
3.3
GTEX-13112-2126-SM-5GCO4
50-59 years, male
3.2
GTEX-13OVI-1126-SM-5KLZF
60-69 years, female
2.8
GTEX-XPVG-0526-SM-4B65N
50-59 years, male
2.8
GTEX-1497J-0826-SM-5NQAJ
60-69 years, male
2.7
GTEX-Y5V6-2026-SM-5IFHO
60-69 years, male
2.7
GTEX-13NYB-1726-SM-5N9G2
40-49 years, male
2.4
GTEX-12696-0926-SM-5FQTV
60-69 years, male
2.2
GTEX-ZC5H-1726-SM-5HL7X
40-49 years, female
2.2
GTEX-11GS4-2326-SM-5A5KS
60-69 years, male
2.1
GTEX-ZVZP-0926-SM-5GIDB
50-59 years, male
2.1
GTEX-1399S-0526-SM-5IJG8
30-39 years, female
2.0
GTEX-13OW6-1826-SM-5N9F9
50-59 years, male
2.0
GTEX-T5JC-1526-SM-4DM68
20-29 years, male
2.0
GTEX-11OF3-1326-SM-5N9FJ
60-69 years, male
1.6
GTEX-13RTJ-2226-SM-5S2Q1
60-69 years, male
1.6
GTEX-11TTK-1926-SM-5PNW8
60-69 years, female
1.5
GTEX-12WSG-0826-SM-5EQ5A
50-59 years, female
1.4
GTEX-QDVN-1626-SM-48TZC
50-59 years, male
1.2
GTEX-P4QS-1126-SM-3NMD5
60-69 years, male
1.1
GTEX-N7MS-1626-SM-3LK5F
60-69 years, male
1.0
GTEX-QLQW-1626-SM-4R1K1
30-39 years, male
0.9
GTEX-ZYFD-1526-SM-5NQ7T
50-59 years, male
0.6
GTEX-NPJ8-2226-SM-3TW8D
40-49 years, male
0.5
GTEX-13O1R-2526-SM-5N9FW
60-69 years, male
0.2
Show all
KIDNEY - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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