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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1051.3
Min RPKM: 29.7
Std RPKM: 303.5
Median RPKM: 326.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
1051.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
1046.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
1038.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
1034.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
974.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
956.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
892.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
885.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
867.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
859.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
841.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
836.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
782.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
777.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
775.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
768.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
764.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
726.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
712.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
701.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
691.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
678.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
672.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
659.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
642.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
638.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
627.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
608.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
561.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
553.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
526.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
458.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
457.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
437.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
437.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
422.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
403.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
399.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
368.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
363.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
341.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
332.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
330.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
327.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
325.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
311.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
290.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
281.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
278.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
271.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
270.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
247.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
242.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
215.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
212.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
211.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
208.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
203.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
200.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
199.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
197.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
194.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
180.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
174.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
167.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
158.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
157.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
153.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
152.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
144.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
110.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
108.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
108.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
103.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
93.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
88.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
83.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
75.4
GTEX-1192X-2526-SM-59868
50-59 years, male
62.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
59.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
51.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
51.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
50.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
49.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
40.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
37.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
30.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
29.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.