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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 28169.8
Min RPKM: 7.3
Std RPKM: 6854.5
Median RPKM: 6414.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
28169.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
26678.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
25671.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
20488.7
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
19923.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
17452.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
16010.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
15822.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
15569.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
15434.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
15424.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
15319.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
15113.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
15041.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
14886.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
14670.4
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
14100.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
13757.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
13726.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
13571.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
13386.5
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
13052.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
12705.3
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
12658.8
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
12568.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
12252.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
12014.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
11623.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
11559.4
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
11012.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
9889.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
9715.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
9479.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
9363.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
9335.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
9262.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
9207.4
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
8993.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
8916.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
8863.5
GTEX-QCQG-1226-SM-48U23
50-59 years, female
8830.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
8654.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
8337.6
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
8215.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
7836.8
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
6908.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
6877.8
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
6597.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
6232.0
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
6025.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
5640.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
5579.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
5498.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
5074.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
4628.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
3877.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
3697.2
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
3561.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
3545.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
3247.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
3132.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
2478.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
2187.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
1367.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
1110.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
956.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
862.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
560.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
441.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
426.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
246.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
245.8
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
173.5
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
156.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
134.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
113.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
110.4
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
108.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
89.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
84.8
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
82.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
75.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
58.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
53.8
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
51.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
50.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
41.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
41.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
39.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
36.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
35.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
32.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
21.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
17.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
15.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
7.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.