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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2324.8
Min RPKM: 0.4
Std RPKM: 362.5
Median RPKM: 129.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
2324.8
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
1870.0
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
959.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
924.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
918.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
851.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
749.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
720.6
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
719.9
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
707.6
GTEX-QCQG-1226-SM-48U23
50-59 years, female
660.9
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
571.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
539.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
516.9
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
475.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
459.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
453.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
449.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
439.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
437.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
436.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
417.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
417.7
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
410.9
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
389.1
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
372.7
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
367.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
355.0
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
355.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
347.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
331.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
322.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
272.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
262.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
244.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
237.8
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
234.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
231.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
220.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
201.9
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
184.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
164.8
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
152.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
146.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
141.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
141.0
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
135.0
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
132.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
127.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
123.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
122.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
121.1
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
109.7
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
90.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
90.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
89.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
87.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
85.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
82.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
77.0
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
76.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
71.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
70.3
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
70.1
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
68.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
66.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
55.5
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
50.9
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
44.0
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
43.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
42.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
40.0
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
33.8
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
32.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
28.6
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
28.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
27.7
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
27.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
23.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
22.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
11.9
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
9.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
7.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
6.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
3.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
3.3
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
3.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
2.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
2.6
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
2.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
2.3
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
2.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
1.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
0.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
0.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
0.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.