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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 18.3
Min RPKM: 3.0
Std RPKM: 3.4
Median RPKM: 9.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
18.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
17.8
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
16.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
16.6
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
16.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
16.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
16.0
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
15.9
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
15.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
15.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
15.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
15.3
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
14.8
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
14.7
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
14.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
14.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
13.7
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
13.6
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
13.5
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
13.1
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
13.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
12.9
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
12.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
12.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
12.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
12.2
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
12.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
12.1
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
12.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
12.1
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
12.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
12.0
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
12.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
11.9
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
11.8
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
11.7
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
11.1
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
10.9
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
10.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
10.6
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
10.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
10.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
10.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
10.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
9.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
9.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
9.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
9.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
9.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
9.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
9.1
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
9.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
9.1
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
8.9
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
8.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
8.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
8.7
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
8.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
8.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
8.2
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
8.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
8.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
8.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
8.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
8.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
8.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
7.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
7.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
7.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
7.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
7.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
7.6
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
7.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
7.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
7.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
7.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
7.0
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
7.0
GTEX-QCQG-1226-SM-48U23
50-59 years, female
7.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
6.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
6.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
6.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
6.6
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
6.5
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
6.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
6.3
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
6.3
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
6.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
5.7
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
5.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
5.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
5.4
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
4.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
4.5
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
3.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
3.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.