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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1053.4
Min RPKM: 0.8
Std RPKM: 227.9
Median RPKM: 216.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
1053.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
947.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
891.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
746.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
746.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
665.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
655.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
653.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
580.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
561.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
548.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
547.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
537.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
529.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
525.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
498.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
477.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
381.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
353.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
349.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
339.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
336.9
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
332.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
330.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
316.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
313.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
312.9
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
309.9
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
284.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
283.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
276.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
271.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
268.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
266.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
248.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
243.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
241.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
237.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
236.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
234.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
229.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
222.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
221.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
220.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
213.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
210.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
198.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
195.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
188.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
175.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
175.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
169.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
148.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
145.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
143.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
135.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
134.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
128.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
127.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
127.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
125.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
113.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
110.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
104.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
103.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
96.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
95.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
92.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
92.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
90.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
76.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
72.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
70.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
61.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
58.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
53.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
42.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
32.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
24.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
20.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
11.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
11.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
10.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
9.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
5.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
4.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
1.5
GTEX-1192X-2526-SM-59868
50-59 years, male
0.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.