We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 354
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 384
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 200.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 450
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 556.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 325
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 415
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 448.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1069.5
Min RPKM: 43.4
Std RPKM: 208.7
Median RPKM: 405.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1069.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
943.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
865.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
847.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
792.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
773.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
749.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
728.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
722.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
707.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
692.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
686.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
683.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
658.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
657.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
655.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
644.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
640.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
629.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
629.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
624.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
623.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
618.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
612.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
604.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
601.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
601.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
594.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
592.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
578.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
573.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
572.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
572.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
559.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
547.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
546.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
535.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
533.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
530.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
528.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
521.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
520.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
511.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
509.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
502.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
500.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
499.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
498.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
496.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
490.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
481.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
476.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
469.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
451.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
448.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
446.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
425.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
424.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
411.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
405.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
395.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
384.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
374.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
373.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
371.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
370.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
368.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
364.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
361.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
356.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
344.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
337.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
334.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
327.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
322.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
313.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
311.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
308.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
307.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
296.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
290.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
283.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
283.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
280.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
280.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
275.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
274.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
266.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
260.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
259.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
256.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
244.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
243.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
242.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
240.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
238.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
235.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
227.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
224.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
220.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
218.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
207.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
193.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
168.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
156.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
148.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
139.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
131.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
128.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
127.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
123.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
122.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
119.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
109.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
102.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
82.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
80.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
79.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
43.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.