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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 627.8
Min RPKM: 195.2
Std RPKM: 71.3
Median RPKM: 308.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
627.8
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
533.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
474.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
470.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
444.3
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
432.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
427.2
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
423.7
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
422.8
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
407.3
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
404.5
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
392.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
387.4
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
378.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
378.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
374.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
374.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
373.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
370.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
363.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
362.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
361.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
353.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
348.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
343.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
343.0
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
338.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
337.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
337.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
337.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
336.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
335.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
335.4
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
334.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
334.2
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
333.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
331.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
325.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
325.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
324.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
317.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
316.9
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
316.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
316.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
315.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
315.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
312.8
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
310.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
306.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
302.4
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
301.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
298.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
298.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
297.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
296.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
296.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
294.6
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
293.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
291.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
289.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
288.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
286.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
286.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
283.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
280.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
280.0
GTEX-QCQG-1226-SM-48U23
50-59 years, female
279.7
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
275.9
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
271.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
271.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
270.2
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
269.2
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
268.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
266.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
266.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
265.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
260.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
258.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
258.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
256.5
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
248.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
244.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
243.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
243.3
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
242.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
241.8
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
238.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
236.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
234.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
228.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
226.6
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
220.6
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
220.5
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
218.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
199.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
195.2
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.