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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 252.9
Min RPKM: 37.6
Std RPKM: 45.4
Median RPKM: 105.4
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
252.9
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
210.3
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
206.1
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
176.7
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
166.5
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
162.8
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
160.5
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
159.6
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
156.3
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
155.1
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
150.2
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
150.2
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
145.3
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
141.8
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
136.5
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
135.7
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
126.4
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
125.3
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
124.6
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
124.2
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
122.3
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
119.9
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
115.2
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
113.5
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
110.0
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
109.5
GTEX-X261-2426-SM-4PQZU
50-59 years, male
107.2
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
106.1
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
105.4
GTEX-11P82-0926-SM-5986X
20-29 years, male
105.3
GTEX-1445S-2926-SM-5O993
60-69 years, male
104.1
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
100.2
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
99.5
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
98.0
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
97.9
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
96.6
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
94.8
GTEX-13113-1526-SM-5EGHV
60-69 years, female
88.4
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
86.0
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
84.1
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
83.8
GTEX-13O21-1926-SM-5MR39
50-59 years, male
80.6
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
74.4
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
72.2
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
63.3
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
61.7
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
59.7
GTEX-Y111-2626-SM-4TT24
50-59 years, male
58.9
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
57.1
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
56.5
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
55.6
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
55.2
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
50.5
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
46.4
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
44.2
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
39.1
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
37.6
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.