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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1391.0
Min RPKM: 483.9
Std RPKM: 160.7
Median RPKM: 769.6
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1391.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1215.3
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1170.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
1111.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1073.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
1042.0
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
1012.1
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1009.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
989.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
987.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
983.6
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
983.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
981.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
946.4
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
945.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
942.1
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
934.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
927.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
917.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
905.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
896.0
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
895.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
895.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
887.2
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
887.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
885.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
882.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
874.3
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
857.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
855.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
848.0
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
846.9
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
844.5
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
837.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
834.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
824.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
823.0
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
812.3
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
805.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
797.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
794.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
792.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
784.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
782.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
779.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
778.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
777.6
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
775.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
764.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
760.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
757.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
743.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
742.0
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
741.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
739.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
738.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
734.3
GTEX-QCQG-1226-SM-48U23
50-59 years, female
730.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
730.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
716.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
713.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
707.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
707.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
700.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
699.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
699.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
693.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
686.4
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
683.1
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
680.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
679.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
677.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
671.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
663.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
662.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
656.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
655.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
644.5
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
640.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
637.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
622.0
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
615.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
614.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
613.1
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
608.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
603.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
602.2
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
588.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
585.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
583.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
564.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
558.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
553.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
551.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
538.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
483.9
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.