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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 944.7
Min RPKM: 294.2
Std RPKM: 149.3
Median RPKM: 517.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
944.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
921.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
867.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
843.2
GTEX-1192X-2526-SM-59868
50-59 years, male
833.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
828.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
802.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
799.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
799.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
779.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
755.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
725.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
709.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
706.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
688.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
665.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
663.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
659.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
650.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
650.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
649.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
645.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
643.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
622.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
615.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
601.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
599.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
598.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
587.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
583.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
578.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
572.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
567.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
563.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
559.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
554.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
546.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
540.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
540.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
538.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
533.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
527.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
527.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
522.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
511.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
509.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
509.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
508.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
501.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
499.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
494.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
481.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
478.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
470.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
467.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
463.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
462.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
461.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
460.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
459.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
454.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
452.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
447.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
445.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
443.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
439.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
432.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
432.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
427.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
419.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
417.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
415.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
413.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
402.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
400.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
399.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
399.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
391.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
391.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
375.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
365.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
339.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
336.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
322.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
319.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
315.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
305.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
294.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.