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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1473.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 937
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 744.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1216.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1326.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1562.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1563.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1531.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1066.9
Min RPKM: 205.7
Std RPKM: 159.8
Median RPKM: 465.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1066.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
987.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
820.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
813.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
777.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
767.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
750.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
748.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
743.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
735.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
732.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
726.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
723.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
718.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
702.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
702.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
679.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
679.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
677.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
659.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
647.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
643.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
631.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
627.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
616.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
615.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
600.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
595.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
586.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
582.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
572.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
570.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
566.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
563.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
562.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
562.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
557.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
552.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
535.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
534.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
532.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
530.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
526.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
525.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
520.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
516.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
510.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
510.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
500.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
492.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
491.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
487.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
483.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
482.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
479.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
477.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
471.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
466.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
465.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
465.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
464.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
464.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
463.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
463.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
460.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
460.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
459.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
457.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
451.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
449.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
443.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
443.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
435.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
435.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
432.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
427.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
426.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
423.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
422.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
421.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
408.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
407.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
401.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
398.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
395.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
393.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
385.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
382.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
377.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
377.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
376.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
374.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
373.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
370.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
367.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
364.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
362.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
352.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
349.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
341.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
339.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
337.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
336.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
331.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
330.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
320.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
311.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
295.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
293.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
287.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
284.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
277.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
277.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
241.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
237.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
227.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
218.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
206.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
205.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.