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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 59.5
Min RPKM: 6.2
Std RPKM: 9.7
Median RPKM: 18.7
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
59.5
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
41.4
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
40.4
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
39.8
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
39.5
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
34.4
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
34.1
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
31.9
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
31.3
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
29.5
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
27.6
GTEX-X261-2426-SM-4PQZU
50-59 years, male
26.9
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
25.1
GTEX-13O21-1926-SM-5MR39
50-59 years, male
23.9
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
23.5
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
23.3
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
23.3
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
23.3
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
23.3
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
22.3
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
22.1
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
22.1
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
22.0
GTEX-Y111-2626-SM-4TT24
50-59 years, male
21.3
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
20.7
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
19.7
GTEX-13113-1526-SM-5EGHV
60-69 years, female
19.5
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
18.8
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
18.7
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
18.5
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
18.0
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
17.6
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
17.3
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
16.7
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
16.5
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
16.4
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
16.4
GTEX-11P82-0926-SM-5986X
20-29 years, male
16.1
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
15.9
GTEX-1445S-2926-SM-5O993
60-69 years, male
15.4
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
15.3
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
14.8
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
14.3
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
13.4
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
13.0
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
12.6
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
12.4
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
12.3
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
12.3
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
12.1
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
11.9
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
11.6
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
11.5
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
11.0
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
10.2
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
9.0
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
6.2
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.