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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 5.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 6.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 8.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 36.8
Min RPKM: 6.7
Std RPKM: 5.3
Median RPKM: 16.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
36.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
36.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
29.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
28.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
27.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
26.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
25.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
25.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
24.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
24.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
24.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
23.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
23.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
23.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
22.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
22.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
22.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
22.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
22.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
22.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
21.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
21.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
21.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
20.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
20.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
20.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
20.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
20.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
19.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
19.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
19.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
19.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
19.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
19.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
18.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
18.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
18.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
18.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
18.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
18.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
18.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
17.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
17.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
17.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
17.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
17.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
17.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
17.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
17.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
17.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
17.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
17.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
17.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
17.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
17.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
17.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
16.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
16.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
16.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
16.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
16.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
16.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
16.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
16.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
16.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
15.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
15.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
15.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
15.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
15.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
15.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
14.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
14.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
14.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
14.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
14.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
14.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
14.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
14.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
14.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
14.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
14.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
13.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
13.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
13.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
13.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
13.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
13.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
12.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
12.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
12.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
12.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
12.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
12.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
11.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
11.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
11.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
11.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
11.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
11.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
11.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
11.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
11.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
10.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
10.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
10.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
10.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
10.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
10.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
10.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
10.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
10.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
9.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
9.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
9.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
9.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
8.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
8.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
6.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
