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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 275.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 39.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 38.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 98.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 48.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 338.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 94.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 182
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 594.4
Min RPKM: 20.1
Std RPKM: 129.7
Median RPKM: 141.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
594.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
522.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
511.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
505.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
502.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
496.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
468.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
466.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
435.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
414.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
396.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
389.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
377.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
347.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
347.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
339.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
336.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
321.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
315.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
309.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
297.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
297.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
296.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
294.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
287.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
284.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
262.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
260.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
254.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
254.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
250.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
247.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
242.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
239.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
234.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
228.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
227.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
224.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
222.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
220.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
219.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
215.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
214.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
204.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
194.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
194.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
192.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
187.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
186.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
184.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
183.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
179.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
169.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
166.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
163.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
158.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
151.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
150.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
144.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
141.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
138.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
138.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
136.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
133.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
133.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
131.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
128.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
126.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
126.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
124.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
117.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
116.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
115.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
115.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
112.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
111.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
111.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
106.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
106.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
103.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
102.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
100.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
98.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
98.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
96.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
94.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
94.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
93.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
93.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
90.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
89.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
88.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
86.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
83.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
81.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
81.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
75.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
70.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
68.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
66.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
63.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
63.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
62.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
61.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
58.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
58.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
55.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
52.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
50.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
50.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
47.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
45.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
45.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
40.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
34.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
29.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
29.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
28.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
20.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.