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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1062.4
Min RPKM: 4.6
Std RPKM: 204.2
Median RPKM: 238.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1062.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
832.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
710.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
675.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
672.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
611.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
554.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
543.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
526.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
516.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
512.9
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
482.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
481.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
462.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
458.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
449.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
447.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
444.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
439.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
437.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
431.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
427.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
422.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
422.0
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
416.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
413.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
412.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
401.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
398.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
370.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
362.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
361.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
360.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
354.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
351.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
334.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
330.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
309.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
292.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
289.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
280.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
277.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
254.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
245.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
231.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
228.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
227.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
225.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
224.9
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
215.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
205.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
204.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
203.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
196.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
194.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
190.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
185.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
182.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
179.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
166.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
164.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
161.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
149.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
140.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
138.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
138.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
134.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
131.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
122.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
112.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
86.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
81.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
76.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
75.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
65.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
55.1
GTEX-1192X-2526-SM-59868
50-59 years, male
51.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
49.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
37.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
30.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
26.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
19.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
18.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
17.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
16.9
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
16.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
11.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
4.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.