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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 55.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 18.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 20.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 37.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 30.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 58.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 38.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 76.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 175.1
Min RPKM: 0.4
Std RPKM: 31.7
Median RPKM: 42.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
175.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
128.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
107.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
105.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
105.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
99.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
99.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
91.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
90.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
87.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
85.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
83.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
82.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
79.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
75.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
74.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
72.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
72.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
71.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
69.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
66.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
66.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
65.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
64.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
63.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
61.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
60.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
60.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
60.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
59.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
58.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
58.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
58.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
56.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
56.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
56.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
55.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
55.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
52.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
51.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
51.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
51.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
51.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
50.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
49.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
48.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
48.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
47.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
46.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
46.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
46.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
45.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
45.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
45.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
44.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
43.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
43.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
43.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
42.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
42.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
42.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
40.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
40.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
40.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
40.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
36.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
34.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
34.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
31.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
30.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
25.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
24.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
23.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
22.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
20.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
19.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
19.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
19.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
18.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
18.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
18.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
17.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
16.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
16.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
16.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
15.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
14.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
13.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
12.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
12.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
12.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
12.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
11.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
11.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
10.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
10.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
9.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
9.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
8.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
7.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
7.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
7.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
6.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
5.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
5.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
4.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
4.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
4.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
4.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
3.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
3.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
3.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
2.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
0.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
0.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
0.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.