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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 913.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1472.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 601.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1684.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1707.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 773.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1129.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1492.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 874.5
Min RPKM: 146.0
Std RPKM: 159.0
Median RPKM: 482.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
874.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
807.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
802.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
799.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
766.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
757.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
751.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
750.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
746.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
723.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
720.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
714.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
709.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
700.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
692.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
689.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
681.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
669.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
665.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
659.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
659.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
654.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
637.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
631.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
610.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
607.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
606.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
606.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
604.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
596.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
593.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
586.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
577.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
577.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
577.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
573.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
572.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
571.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
557.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
551.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
550.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
548.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
547.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
538.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
536.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
526.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
526.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
525.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
524.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
523.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
523.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
512.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
512.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
509.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
497.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
497.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
487.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
484.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
483.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
482.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
481.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
477.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
472.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
472.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
467.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
460.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
459.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
459.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
457.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
453.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
448.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
448.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
445.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
444.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
435.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
434.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
432.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
429.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
419.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
414.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
412.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
412.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
411.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
407.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
403.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
393.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
379.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
372.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
366.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
366.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
365.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
364.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
359.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
351.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
347.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
346.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
340.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
326.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
325.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
318.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
315.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
297.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
295.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
292.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
289.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
287.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
284.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
280.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
267.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
262.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
261.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
257.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
230.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
228.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
219.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
184.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
182.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
169.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
146.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.