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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Neuronal cells: 35 Glial cells and endothelial cells: 65
Male, age 70
Sample 3 TPM: 91.3
Cell types%
Neuronal cells: 35 Glial cells and endothelial cells: 65
CEREBRAL CORTEX - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 90.3
Min RPKM: 20.2
Std RPKM: 15.6
Median RPKM: 56.7
GTEX-13SLX-3126-SM-5S2Q5
50-59 years, female
90.3
GTEX-14BMV-3026-SM-5S2PQ
50-59 years, male
85.4
GTEX-WL46-2926-SM-3LK82
50-59 years, male
84.4
GTEX-T6MN-2626-SM-32PMQ
50-59 years, male
82.4
GTEX-13VXU-2926-SM-5LU5C
50-59 years, male
81.7
GTEX-145MF-2726-SM-5O995
50-59 years, male
78.2
GTEX-T5JC-2426-SM-3NMDB
20-29 years, male
77.6
GTEX-13OW8-2826-SM-5L3GC
60-69 years, male
77.1
GTEX-Y111-2726-SM-4TT3N
50-59 years, male
77.0
GTEX-WVLH-3026-SM-3MJG9
50-59 years, male
76.6
GTEX-14ASI-3026-SM-5S2PN
60-69 years, male
75.6
GTEX-13OW6-3026-SM-5J2MI
50-59 years, male
74.7
GTEX-1313W-3126-SM-5LZUI
50-59 years, female
73.9
GTEX-145LS-3126-SM-5Q5BY
60-69 years, female
73.4
GTEX-117XS-3026-SM-5N9CA
60-69 years, male
72.9
GTEX-13O3Q-2926-SM-5KM45
50-59 years, male
72.9
GTEX-Q2AG-2926-SM-2HMJ3
40-49 years, female
71.8
GTEX-YJ89-3026-SM-5IFJI
60-69 years, male
71.8
GTEX-X585-3026-SM-46MWF
50-59 years, male
71.4
GTEX-13FLW-1426-SM-5K7YE
50-59 years, male
70.9
GTEX-RNOR-2326-SM-2TF4I
50-59 years, female
70.4
GTEX-WWYW-3126-SM-3NB39
50-59 years, female
70.2
GTEX-12WSC-3026-SM-5GCNF
50-59 years, male
69.7
GTEX-13FXS-3126-SM-5J2NN
50-59 years, male
69.2
GTEX-ZYFD-3026-SM-5E44C
50-59 years, male
69.2
GTEX-11ZUS-2926-SM-5FQSL
30-39 years, male
68.4
GTEX-11ONC-2926-SM-5P9JM
60-69 years, male
67.9
GTEX-Z93S-2926-SM-57WB9
50-59 years, male
67.3
GTEX-WZTO-2926-SM-3NM9I
40-49 years, male
66.2
GTEX-145MH-3026-SM-5Q5DZ
50-59 years, male
66.0
GTEX-11GSO-2926-SM-5HL73
60-69 years, male
65.6
GTEX-12ZZY-3026-SM-5GCOU
60-69 years, male
65.5
GTEX-145MG-3026-SM-5RQJA
50-59 years, male
65.3
GTEX-XOTO-3026-SM-4B65M
50-59 years, male
64.3
GTEX-XLM4-3026-SM-4AT6L
60-69 years, male
63.6
GTEX-ZUA1-3026-SM-59HJC
40-49 years, male
63.5
GTEX-12126-1026-SM-5P9JJ
20-29 years, male
62.8
GTEX-TSE9-3026-SM-3DB76
60-69 years, female
62.5
GTEX-YFC4-3126-SM-5PNV6
40-49 years, female
62.5
GTEX-12ZZX-2926-SM-5GCOQ
40-49 years, female
61.9
GTEX-11PRG-2926-SM-5987A
50-59 years, male
61.5
GTEX-T2IS-3026-SM-32QPM
20-29 years, female
61.0
GTEX-ZVT3-3026-SM-5E43N
60-69 years, female
61.0
GTEX-144GL-3026-SM-5Q5CW
50-59 years, male
60.6
GTEX-13OVH-3026-SM-5MR4N
70-79 years, male
60.0
GTEX-11DXY-3226-SM-5GIDE
60-69 years, male
59.3
GTEX-13FHO-3026-SM-5J1O9
60-69 years, male
59.3
GTEX-ZAK1-3026-SM-5S2MJ
50-59 years, female
59.1
GTEX-WHSE-3026-SM-3P5ZH
20-29 years, male
59.0
GTEX-11DXW-1126-SM-5H12Q
40-49 years, male
58.8
GTEX-11GS4-3126-SM-5A5LH
60-69 years, male
58.1
GTEX-R55F-1326-SM-5S2V4
50-59 years, male
58.1
GTEX-Y8DK-0826-SM-4TT3T
60-69 years, male
58.1
GTEX-1117F-3226-SM-5N9CT
60-69 years, female
57.5
GTEX-13O3O-3126-SM-5KM3H
60-69 years, female
57.2
GTEX-111FC-3126-SM-5GZZ2
60-69 years, male
57.1
GTEX-131YS-3126-SM-5KLYT
60-69 years, female
56.7
GTEX-X4XX-3026-SM-3NMB2
60-69 years, male
56.7
GTEX-12ZZW-2926-SM-5LZUP
50-59 years, male
56.4
GTEX-13NYB-3026-SM-5IJD7
40-49 years, male
55.9
GTEX-11OC5-0726-SM-5P9JK
60-69 years, male
54.5
GTEX-13S7M-3126-SM-5RQJQ
60-69 years, female
53.8
GTEX-QMR6-1426-SM-32PLA
50-59 years, male
52.9
GTEX-13NYC-2826-SM-5K7WR
60-69 years, male
52.6
GTEX-13QIC-2926-SM-5J2NF
60-69 years, female
51.9
GTEX-11NUK-2926-SM-5A5MD
50-59 years, male
51.7
GTEX-1399T-3026-SM-5KLZC
60-69 years, male
51.7
GTEX-PVOW-2526-SM-2XCF7
40-49 years, male
51.7
GTEX-12ZZZ-3026-SM-5BC67
60-69 years, male
51.4
GTEX-13FHP-3026-SM-5IJBS
50-59 years, male
51.0
GTEX-ZAJG-3126-SM-5HL9J
50-59 years, female
51.0
GTEX-132Q8-3026-SM-5PNVG
60-69 years, male
50.2
GTEX-12WSH-3026-SM-5CVNI
50-59 years, male
50.0
GTEX-11OF3-2926-SM-5HL78
60-69 years, male
49.3
GTEX-1192X-3126-SM-5N9BY
50-59 years, male
49.0
GTEX-QVJO-1426-SM-2S1QY
60-69 years, female
47.9
GTEX-1128S-2726-SM-5H12C
60-69 years, female
47.4
GTEX-13NYS-3126-SM-5KLYV
60-69 years, male
47.2
GTEX-14A5I-2926-SM-5Q5CQ
50-59 years, female
46.4
GTEX-NPJ8-1526-SM-2D7VU
40-49 years, male
45.4
GTEX-QDT8-2926-SM-32PKC
30-39 years, female
45.3
GTEX-OXRN-2426-SM-2I5EQ
50-59 years, male
45.0
GTEX-13X6J-3026-SM-5Q5CU
50-59 years, male
44.7
GTEX-QVUS-2826-SM-3GADB
60-69 years, female
44.3
GTEX-147GR-3026-SM-5S2ML
60-69 years, male
42.9
GTEX-13PL6-3126-SM-5LUAR
40-49 years, female
41.9
GTEX-NPJ7-2726-SM-2I3FT
60-69 years, female
41.8
GTEX-11EMC-3226-SM-5EGKW
60-69 years, female
41.3
GTEX-13OW7-3026-SM-5L3GY
50-59 years, male
41.2
GTEX-ZE7O-3126-SM-5HL5X
50-59 years, female
41.1
GTEX-ZZPT-3026-SM-5GZXH
50-59 years, male
40.8
GTEX-131XW-3126-SM-5LZUC
50-59 years, female
39.5
GTEX-RU72-3026-SM-5SI7Y
50-59 years, female
38.2
GTEX-11WQK-3026-SM-5EQL6
50-59 years, male
37.8
GTEX-144FL-3026-SM-5O99C
50-59 years, male
37.3
GTEX-13X6K-2926-SM-5Q5D5
60-69 years, female
36.7
GTEX-13JVG-3126-SM-5L3FH
60-69 years, male
36.3
GTEX-12WSD-3126-SM-5HL7P
60-69 years, female
36.1
GTEX-11EI6-3026-SM-5GZZO
60-69 years, male
34.9
GTEX-13JUV-2926-SM-5LZX7
40-49 years, female
33.7
GTEX-11NV4-2126-SM-5N9DS
60-69 years, male
33.5
GTEX-13G51-3026-SM-5IJB8
60-69 years, male
32.9
GTEX-N7MT-1126-SM-5SI7V
60-69 years, female
32.6
GTEX-139T8-1026-SM-5J2MC
60-69 years, male
32.2
GTEX-UTHO-3026-SM-3GAFB
60-69 years, male
32.1
GTEX-13PVQ-3026-SM-5SI93
50-59 years, male
30.9
GTEX-11O72-2926-SM-5BC4V
40-49 years, male
30.7
GTEX-1445S-3026-SM-5O9BR
60-69 years, male
29.4
GTEX-11TTK-2926-SM-5PNYP
60-69 years, female
29.0
GTEX-13OVJ-2826-SM-5L3GW
50-59 years, female
27.6
GTEX-13IVO-2926-SM-5L3CZ
70-79 years, male
26.5
GTEX-11GSP-3226-SM-5986O
60-69 years, female
25.9
GTEX-PWO3-0926-SM-2I5EY
60-69 years, female
22.2
GTEX-12WSA-2926-SM-5EQ4D
60-69 years, male
20.2
Show all
Brain - Frontal Cortex (BA9) RPKM: 43.7
Samples: 108
Max RPKM: 70.7
Min RPKM: 15.9
Std RPKM: 15.7
Median RPKM: 47.8
GTEX-13RTJ-0011-R10b-SM-5O9CW
60-69 years, male
70.7
GTEX-13N1W-0011-R10b-SM-5MR4H
70-79 years, male
69.6
GTEX-13OW7-0011-R10a-SM-5L3H3
50-59 years, male
68.0
GTEX-Q2AG-0011-R10A-SM-2HMLA
40-49 years, female
67.5
GTEX-X4EP-0011-R10B-SM-4QASJ
60-69 years, female
67.5
GTEX-1313W-0011-R10b-SM-5DUXA
50-59 years, female
66.2
GTEX-13SLX-0011-R10a-SM-5P9HV
50-59 years, female
66.2
GTEX-14ASI-0011-R10b-SM-5S2VZ
60-69 years, male
65.5
GTEX-14BIN-0011-R10a-SM-5S2UA
50-59 years, female
63.2
GTEX-12WSC-0011-R10a-SM-5GU57
50-59 years, male
62.3
GTEX-13X6K-0011-R10a-SM-5P9JR
60-69 years, female
62.0
GTEX-13O3O-0011-R10a-SM-5LUA9
60-69 years, female
61.1
GTEX-131XH-0011-R10a-SM-5EGLJ
50-59 years, male
61.0
GTEX-WZTO-0011-R10B-SM-4E3KB
40-49 years, male
61.0
GTEX-145MH-0011-R10b-SM-5PNUK
50-59 years, male
60.7
GTEX-T6MN-0011-R10A-SM-32QP7
50-59 years, male
60.7
GTEX-12WSE-0011-R10b-SM-5P9JV
20-29 years, male
60.5
GTEX-145MG-0011-R10a-SM-5PNWG
50-59 years, male
60.4
GTEX-WL46-0011-R10A-SM-3MJFQ
50-59 years, male
60.3
GTEX-13O3Q-0011-R10b-SM-5KM39
50-59 years, male
60.0
GTEX-12WSF-0011-R10a-SM-5LZVH
70-79 years, male
59.8
GTEX-NL3H-0011-R10A-SM-2I3E9
60-69 years, male
59.3
GTEX-13CZV-0011-R10b-SM-5LZYD
60-69 years, male
59.0
GTEX-WVLH-0011-R10A-SM-3MJFM
50-59 years, male
58.7
GTEX-X585-0011-R10A-SM-46MUY
50-59 years, male
58.2
GTEX-13S7M-0011-R10b-SM-5PNZB
60-69 years, female
58.0
GTEX-YFC4-0011-R10a-SM-4SOK5
40-49 years, female
57.7
GTEX-145LS-0011-R10a-SM-5PNUQ
60-69 years, female
57.4
GTEX-13FXS-0011-R10a-SM-5J2MA
50-59 years, male
57.2
GTEX-Y8DK-0011-R10A-SM-4SOK1
60-69 years, male
56.5
GTEX-12ZZZ-0011-R10a-SM-5P9HC
60-69 years, male
56.4
GTEX-X4XX-0011-R10B-SM-46MWO
60-69 years, male
55.0
GTEX-N7MS-0011-R10A-SM-2HMJK
60-69 years, male
54.7
GTEX-S7SE-0011-R10A-SM-2XCDF
50-59 years, male
54.6
GTEX-N7MT-0011-R10A-SM-2I3E1
60-69 years, female
53.7
GTEX-YJ89-0011-R10a-SM-4SOK9
60-69 years, male
53.6
GTEX-131YS-0011-R10b-SM-5EQ5N
60-69 years, female
53.3
GTEX-13NYS-0011-R10a-SM-5MR4S
60-69 years, male
52.5
GTEX-12WSH-0011-R10a-SM-5LZUS
50-59 years, male
52.1
GTEX-147GR-0011-R10b-SM-5S2UM
60-69 years, male
52.0
GTEX-13FHO-0011-R10b-SM-5J2MM
60-69 years, male
51.5
GTEX-XLM4-0011-R10A-SM-4AT5P
60-69 years, male
51.5
GTEX-13OW8-0011-R10a-SM-5L3H6
60-69 years, male
51.4
GTEX-12ZZX-0011-R10b-SM-5DUWK
40-49 years, female
50.9
GTEX-13OVL-0011-R10a-SM-5L3GS
50-59 years, male
50.8
GTEX-T5JC-0011-R10A-SM-32PM2
20-29 years, male
50.8
GTEX-13FLW-0011-R10b-SM-5LZZF
50-59 years, male
50.1
GTEX-ZF28-0011-R10a-SM-4WWEH
60-69 years, male
49.9
GTEX-13OW6-0011-R10a-SM-5L3HE
50-59 years, male
49.3
GTEX-13X6J-0011-R10b-SM-5PNWA
50-59 years, male
49.1
GTEX-132Q8-0011-R10b-SM-5DUWZ
60-69 years, male
48.4
GTEX-13QIC-0011-R10a-SM-5O9C7
60-69 years, female
48.4
GTEX-14BIL-0011-R10a-SM-5SI75
50-59 years, male
47.9
GTEX-12WSM-0011-R10a-SM-5DUWV
60-69 years, male
47.8
GTEX-13QJC-0011-R10a-SM-5SI63
60-69 years, female
47.8
GTEX-ZAB4-0011-R10a-SM-4SOKH
40-49 years, male
46.3
GTEX-NPJ8-0011-R10A-SM-2YUMO
40-49 years, male
46.1
GTEX-11H98-0011-R10b-SM-5NQ98
50-59 years, male
45.0
GTEX-WWYW-0011-R10A-SM-3NB35
50-59 years, female
44.8
GTEX-ZVZQ-0011-R10b-SM-51MRT
60-69 years, female
44.3
GTEX-13FLV-0011-R10b-SM-5LZZ2
50-59 years, male
43.8
GTEX-Z93S-0011-R10a-SM-4RGNM
50-59 years, male
42.7
GTEX-12ZZY-0011-R10b-SM-5HL7W
60-69 years, male
42.2
GTEX-13G51-0011-R10b-SM-5LZYF
60-69 years, male
41.1
GTEX-TSE9-0011-R10A-SM-3DB7O
60-69 years, female
39.0
GTEX-ZDXO-0011-R10a-SM-4WWD8
60-69 years, male
38.6
GTEX-ZVT3-0011-R10b-SM-57WB6
60-69 years, female
38.5
GTEX-13NYB-0011-R10a-SM-5KM43
40-49 years, male
38.2
GTEX-147F4-0011-R10b-SM-5S2WC
50-59 years, male
37.9
GTEX-NPJ7-0011-R10A-SM-2I3E5
60-69 years, female
37.6
GTEX-QDT8-0011-R10A-SM-32PKG
30-39 years, female
37.6
GTEX-13X6I-0011-R10a-SM-5PNWI
60-69 years, male
36.8
GTEX-QVJO-0011-R10A-SM-2S1QJ
60-69 years, female
36.2
GTEX-13JUV-0011-R10b-SM-5LZXR
40-49 years, female
36.1
GTEX-145LU-0011-R10a-SM-5PNWJ
50-59 years, male
34.3
GTEX-QMR6-0011-R10A-SM-32PKO
50-59 years, male
33.0
GTEX-12126-0011-R10b-SM-5BC6T
20-29 years, male
32.2
GTEX-13SLW-0011-R10a-SM-5S2UI
70-79 years, male
31.5
GTEX-13FTZ-0011-R10b-SM-5KLZS
60-69 years, male
30.5
GTEX-OXRN-0011-R10A-SM-2I5GC
50-59 years, male
30.0
GTEX-11WQC-0011-R10a-SM-57WCT
60-69 years, male
29.2
GTEX-RVPU-0011-R10A-SM-2XCAH
50-59 years, male
29.2
GTEX-ZUA1-0011-R10a-SM-51MT6
40-49 years, male
28.0
GTEX-P44H-0011-R10A-SM-2XCEK
40-49 years, male
27.9
GTEX-NL4W-0011-R10A-SM-2I3DY
50-59 years, male
26.4
GTEX-12ZZW-0011-R10b-SM-5HL9X
50-59 years, male
25.2
GTEX-QVUS-0011-R10A-SM-3GIK3
60-69 years, female
25.0
GTEX-X261-0011-R10B-SM-4E3JT
50-59 years, male
24.0
GTEX-ZXG5-0011-R10a-SM-57WDD
60-69 years, male
23.6
GTEX-11ZUS-0011-R10b-SM-5BC79
30-39 years, male
23.2
GTEX-13N2G-0011-R10a-SM-5MR34
60-69 years, male
23.0
GTEX-1477Z-0011-R10b-SM-5S2RF
60-69 years, male
21.7
GTEX-139TS-0011-R10a-SM-5K7TU
60-69 years, male
21.5
GTEX-13NZA-0011-R10b-SM-5KM54
60-69 years, male
21.5
GTEX-13JVG-0011-R10b-SM-5KM2P
60-69 years, male
21.4
GTEX-11WQK-0011-R10a-SM-5BC6R
50-59 years, male
21.2
GTEX-12WSA-0011-R10b-SM-5P9ET
60-69 years, male
21.1
GTEX-13IVO-0011-R10a-SM-5LZY3
70-79 years, male
20.3
GTEX-11GSP-0011-R10a-SM-5NQ7J
60-69 years, female
20.2
GTEX-12WSD-0011-R10b-SM-5GU79
60-69 years, female
20.2
GTEX-13OVJ-0011-R10b-SM-5L3HT
50-59 years, female
19.9
GTEX-14753-0011-R10b-SM-5S2WE
60-69 years, male
19.8
GTEX-131XW-0011-R10a-SM-5DUVA
50-59 years, female
18.8
GTEX-OXRO-0011-R10A-SM-2I5EH
60-69 years, female
17.1
GTEX-ZE7O-0011-R10a-SM-57WAZ
50-59 years, female
17.1
GTEX-XMD1-0011-R10A-SM-4AT4A
60-69 years, male
16.3
GTEX-1445S-0011-R10a-SM-5PNWB
60-69 years, male
16.2
GTEX-ZV68-0011-R10a-SM-51MT7
50-59 years, female
15.9
Show all
CEREBRAL CORTEX - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.