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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 171.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 34.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 32.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 100
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 73.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 156.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 94.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 153.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 614.1
Min RPKM: 55.5
Std RPKM: 118.8
Median RPKM: 297.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
614.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
613.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
538.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
528.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
518.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
517.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
515.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
507.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
484.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
479.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
475.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
455.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
452.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
451.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
449.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
448.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
445.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
439.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
418.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
414.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
410.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
408.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
404.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
398.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
396.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
393.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
393.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
392.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
387.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
385.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
382.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
375.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
372.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
364.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
363.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
362.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
360.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
357.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
353.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
350.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
347.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
338.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
335.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
335.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
335.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
334.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
334.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
333.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
332.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
331.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
328.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
325.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
320.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
315.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
309.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
308.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
305.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
300.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
298.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
297.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
289.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
289.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
286.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
283.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
272.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
270.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
267.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
266.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
264.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
260.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
253.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
253.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
252.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
252.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
251.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
250.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
248.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
240.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
239.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
239.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
230.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
227.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
225.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
224.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
220.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
219.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
218.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
216.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
210.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
201.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
197.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
196.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
194.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
194.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
191.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
187.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
182.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
182.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
178.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
178.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
177.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
176.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
173.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
169.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
168.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
158.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
154.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
152.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
151.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
141.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
140.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
133.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
126.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
117.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
115.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
110.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
82.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
79.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
55.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.