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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 19365.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 14645
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 19244.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 23538
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 21650.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 20718
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 15526.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 23910.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 7347.4
Min RPKM: 367.5
Std RPKM: 1268.3
Median RPKM: 2456.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
7347.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
6849.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
6550.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
6377.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
5908.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
4999.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
4974.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
4849.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
4683.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
4602.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
4378.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
4245.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
4204.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
3911.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
3906.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
3896.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
3889.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
3845.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
3822.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
3816.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
3774.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
3723.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
3706.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
3623.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
3546.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
3534.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
3511.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
3506.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
3475.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
3437.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
3435.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
3434.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
3422.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
3390.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
3293.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
3235.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
3166.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
3158.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
3147.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
3138.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
3077.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
3051.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
3012.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
2974.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
2886.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
2775.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2679.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
2672.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
2631.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
2631.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
2631.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
2616.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
2615.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
2590.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
2569.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
2552.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
2480.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
2470.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2468.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2456.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2420.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
2395.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
2381.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
2374.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
2345.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2331.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
2326.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2282.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
2281.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
2274.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
2260.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
2241.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
2190.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
2164.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
2132.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2091.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
2064.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2060.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1972.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1948.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1942.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1931.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1918.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1889.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1887.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1880.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1867.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1852.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1842.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1807.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1803.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1802.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1785.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1779.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1753.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1666.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1663.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1633.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
1608.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1546.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1542.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1536.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1520.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1512.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1500.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1497.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1490.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1392.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1360.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
1349.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1339.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1270.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1217.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1207.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1148.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
1116.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1074.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
686.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
367.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.