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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1509.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1038.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 841.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1281.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1166.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1763.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1443.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1782.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1068.1
Min RPKM: 173.8
Std RPKM: 189.2
Median RPKM: 528.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1068.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
1066.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
917.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
878.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
862.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
843.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
829.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
816.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
815.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
812.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
807.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
803.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
791.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
789.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
785.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
779.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
771.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
767.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
767.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
741.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
730.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
713.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
684.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
677.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
675.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
671.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
669.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
664.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
641.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
633.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
633.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
627.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
621.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
615.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
612.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
612.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
609.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
607.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
606.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
606.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
594.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
582.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
580.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
579.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
576.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
573.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
566.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
564.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
559.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
559.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
554.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
548.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
546.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
545.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
544.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
538.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
538.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
530.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
530.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
528.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
522.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
517.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
509.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
506.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
506.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
503.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
502.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
501.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
501.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
497.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
496.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
486.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
483.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
482.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
480.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
474.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
474.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
457.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
455.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
451.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
449.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
448.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
447.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
445.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
441.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
437.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
421.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
407.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
405.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
402.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
388.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
383.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
377.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
375.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
362.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
361.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
345.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
339.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
337.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
333.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
332.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
321.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
318.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
305.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
303.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
298.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
285.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
284.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
281.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
279.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
246.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
245.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
243.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
211.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
187.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
177.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
176.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
174.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
173.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.