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COLON - Expression summary
RNA expressioni
HPA:107.1TPM
GTEx:43.0RPKM
FANTOM5:276.9Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 107.1
overview Male, age 54 Sample 1
TPM: 168.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 118.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 103.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 104
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 91
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 122.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 103.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 115.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 94.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 84.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 106.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 72.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 107.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 43.0
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 32.5
Samples: 149

Max RPKM: 147.6
Min RPKM: 8.5
Std RPKM: 21.6
Median RPKM: 25.2
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 147.6
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 96.8
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 94.9
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 89.1
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 88.3
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 86.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 83.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 81.0
GTEX-XBED-1726-SM-47JYO 60-69 years, male 80.3
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 76.1
Show all
Colon - Transverse
RPKM: 50.9
Samples: 196

Max RPKM: 259.5
Min RPKM: 14.9
Std RPKM: 26.4
Median RPKM: 45.6
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 259.5
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 188.2
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 137.4
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 104.8
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 103.7
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 100.7
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 100.2
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 98.6
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 97.8
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 96.9
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 276.9
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 388.7
FF:10014-101C5 62,83,84 years, mixed 276.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.