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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 712.8
Min RPKM: 157.8
Std RPKM: 108.6
Median RPKM: 371.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
712.8
GTEX-1192X-2526-SM-59868
50-59 years, male
622.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
545.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
531.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
528.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
524.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
510.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
503.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
494.0
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
490.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
490.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
481.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
481.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
475.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
473.9
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
473.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
471.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
467.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
466.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
459.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
458.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
455.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
449.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
449.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
443.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
441.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
438.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
437.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
435.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
426.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
424.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
418.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
416.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
416.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
412.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
411.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
407.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
407.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
395.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
395.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
394.3
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
383.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
377.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
375.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
367.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
355.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
354.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
350.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
344.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
342.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
341.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
336.5
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
333.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
326.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
319.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
316.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
313.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
304.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
301.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
293.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
289.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
285.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
281.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
281.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
280.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
280.4
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
277.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
276.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
270.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
267.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
267.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
256.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
256.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
255.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
252.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
242.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
241.6
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
240.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
238.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
228.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
225.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
215.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
208.8
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
205.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
204.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
194.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
176.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
157.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.