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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 3297.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 3390.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2916
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3526.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3335.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 3147.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3185.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4182.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 348.6
Min RPKM: 39.4
Std RPKM: 50.0
Median RPKM: 136.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
348.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
326.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
314.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
279.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
258.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
224.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
223.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
223.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
220.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
210.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
201.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
200.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
200.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
198.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
196.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
195.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
193.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
192.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
192.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
187.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
186.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
186.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
183.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
180.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
179.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
172.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
172.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
168.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
166.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
165.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
165.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
163.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
161.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
161.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
161.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
158.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
158.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
157.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
154.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
153.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
153.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
151.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
150.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
150.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
148.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
148.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
148.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
143.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
143.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
142.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
142.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
141.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
141.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
140.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
140.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
139.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
139.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
138.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
138.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
136.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
136.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
135.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
134.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
134.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
134.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
133.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
133.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
133.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
132.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
132.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
132.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
130.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
129.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
126.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
126.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
124.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
122.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
122.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
122.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
121.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
120.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
119.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
117.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
115.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
115.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
115.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
114.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
112.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
112.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
111.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
111.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
110.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
110.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
108.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
107.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
107.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
107.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
106.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
105.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
103.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
101.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
100.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
100.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
100.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
99.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
99.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
97.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
96.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
92.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
92.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
90.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
89.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
85.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
84.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
81.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
72.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
70.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
60.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
39.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.