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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 662.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 832.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 448.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1026.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 618.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 561.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 524.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 958.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 605.8
Min RPKM: 14.5
Std RPKM: 97.5
Median RPKM: 103.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
605.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
435.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
400.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
358.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
337.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
324.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
309.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
305.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
293.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
288.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
280.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
278.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
276.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
265.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
255.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
253.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
242.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
238.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
225.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
225.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
225.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
211.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
211.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
195.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
192.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
191.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
188.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
167.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
167.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
161.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
161.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
159.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
156.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
152.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
147.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
146.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
145.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
145.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
144.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
144.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
143.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
142.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
141.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
140.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
139.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
138.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
135.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
133.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
128.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
124.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
122.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
121.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
120.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
119.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
117.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
113.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
112.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
108.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
104.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
103.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
99.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
99.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
98.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
97.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
97.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
96.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
95.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
93.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
93.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
88.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
87.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
86.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
85.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
85.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
82.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
77.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
73.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
72.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
72.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
71.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
71.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
70.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
70.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
69.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
68.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
67.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
67.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
64.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
63.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
62.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
62.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
60.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
60.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
59.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
58.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
58.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
58.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
55.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
55.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
54.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
54.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
54.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
53.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
52.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
49.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
49.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
48.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
48.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
47.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
42.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
42.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
42.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
35.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
33.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
28.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
28.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
17.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
16.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
14.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.