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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA004469
Neuronal cells
Medium
Glial cells
Not detected
Neuronal projections
Medium
Synapses
Not detected
Antibody stainingi
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Neuronal cells: 35 Glial cells and endothelial cells: 65
Male, age 70
Sample 3 TPM: 404.4
Cell types%
Neuronal cells: 35 Glial cells and endothelial cells: 65
CEREBRAL CORTEX - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1180.8
Min RPKM: 89.3
Std RPKM: 170.9
Median RPKM: 558.1
GTEX-11TTK-2926-SM-5PNYP
60-69 years, female
1180.8
GTEX-13JUV-2926-SM-5LZX7
40-49 years, female
1082.9
GTEX-11NV4-2126-SM-5N9DS
60-69 years, male
1079.5
GTEX-12WSA-2926-SM-5EQ4D
60-69 years, male
986.7
GTEX-PWO3-0926-SM-2I5EY
60-69 years, female
935.0
GTEX-13JVG-3126-SM-5L3FH
60-69 years, male
909.1
GTEX-X585-3026-SM-46MWF
50-59 years, male
876.1
GTEX-ZVT3-3026-SM-5E43N
60-69 years, female
846.2
GTEX-11GSP-3226-SM-5986O
60-69 years, female
810.7
GTEX-11EMC-3226-SM-5EGKW
60-69 years, female
790.6
GTEX-Y111-2726-SM-4TT3N
50-59 years, male
781.0
GTEX-13S7M-3126-SM-5RQJQ
60-69 years, female
780.7
GTEX-X4XX-3026-SM-3NMB2
60-69 years, male
778.8
GTEX-UTHO-3026-SM-3GAFB
60-69 years, male
773.5
GTEX-11OC5-0726-SM-5P9JK
60-69 years, male
771.1
GTEX-QVUS-2826-SM-3GADB
60-69 years, female
757.6
GTEX-13QIC-2926-SM-5J2NF
60-69 years, female
747.8
GTEX-13OVJ-2826-SM-5L3GW
50-59 years, female
739.8
GTEX-14A5I-2926-SM-5Q5CQ
50-59 years, female
736.7
GTEX-1445S-3026-SM-5O9BR
60-69 years, male
726.9
GTEX-13X6J-3026-SM-5Q5CU
50-59 years, male
726.5
GTEX-12ZZW-2926-SM-5LZUP
50-59 years, male
719.1
GTEX-RU72-3026-SM-5SI7Y
50-59 years, female
717.5
GTEX-Z93S-2926-SM-57WB9
50-59 years, male
702.4
GTEX-QDT8-2926-SM-32PKC
30-39 years, female
696.5
GTEX-145LS-3126-SM-5Q5BY
60-69 years, female
691.8
GTEX-13X6K-2926-SM-5Q5D5
60-69 years, female
686.2
GTEX-1117F-3226-SM-5N9CT
60-69 years, female
682.7
GTEX-ZAK1-3026-SM-5S2MJ
50-59 years, female
680.3
GTEX-13IVO-2926-SM-5L3CZ
70-79 years, male
676.0
GTEX-N7MT-1126-SM-5SI7V
60-69 years, female
675.1
GTEX-QVJO-1426-SM-2S1QY
60-69 years, female
650.8
GTEX-13NYS-3126-SM-5KLYV
60-69 years, male
644.4
GTEX-YJ89-3026-SM-5IFJI
60-69 years, male
644.2
GTEX-12WSD-3126-SM-5HL7P
60-69 years, female
643.1
GTEX-ZAJG-3126-SM-5HL9J
50-59 years, female
643.0
GTEX-147GR-3026-SM-5S2ML
60-69 years, male
638.9
GTEX-13NYB-3026-SM-5IJD7
40-49 years, male
628.2
GTEX-13O3O-3126-SM-5KM3H
60-69 years, female
624.9
GTEX-1128S-2726-SM-5H12C
60-69 years, female
621.8
GTEX-144FL-3026-SM-5O99C
50-59 years, male
621.8
GTEX-12ZZX-2926-SM-5GCOQ
40-49 years, female
621.5
GTEX-NPJ8-1526-SM-2D7VU
40-49 years, male
619.7
GTEX-13OW6-3026-SM-5J2MI
50-59 years, male
615.4
GTEX-13PL6-3126-SM-5LUAR
40-49 years, female
613.7
GTEX-ZZPT-3026-SM-5GZXH
50-59 years, male
610.5
GTEX-Y8DK-0826-SM-4TT3T
60-69 years, male
600.3
GTEX-13FHO-3026-SM-5J1O9
60-69 years, male
598.2
GTEX-139T8-1026-SM-5J2MC
60-69 years, male
593.4
GTEX-1399T-3026-SM-5KLZC
60-69 years, male
582.1
GTEX-117XS-3026-SM-5N9CA
60-69 years, male
581.7
GTEX-1192X-3126-SM-5N9BY
50-59 years, male
575.0
GTEX-11ZUS-2926-SM-5FQSL
30-39 years, male
570.1
GTEX-13SLX-3126-SM-5S2Q5
50-59 years, female
566.3
GTEX-11WQK-3026-SM-5EQL6
50-59 years, male
566.2
GTEX-T6MN-2626-SM-32PMQ
50-59 years, male
561.4
GTEX-131XW-3126-SM-5LZUC
50-59 years, female
558.9
GTEX-11EI6-3026-SM-5GZZO
60-69 years, male
557.4
GTEX-NPJ7-2726-SM-2I3FT
60-69 years, female
556.2
GTEX-XLM4-3026-SM-4AT6L
60-69 years, male
551.1
GTEX-11PRG-2926-SM-5987A
50-59 years, male
550.1
GTEX-WWYW-3126-SM-3NB39
50-59 years, female
547.0
GTEX-13PVQ-3026-SM-5SI93
50-59 years, male
545.9
GTEX-144GL-3026-SM-5Q5CW
50-59 years, male
540.4
GTEX-T5JC-2426-SM-3NMDB
20-29 years, male
530.9
GTEX-13O3Q-2926-SM-5KM45
50-59 years, male
530.7
GTEX-PVOW-2526-SM-2XCF7
40-49 years, male
527.7
GTEX-13NYC-2826-SM-5K7WR
60-69 years, male
526.3
GTEX-13FHP-3026-SM-5IJBS
50-59 years, male
525.6
GTEX-WL46-2926-SM-3LK82
50-59 years, male
521.9
GTEX-12ZZZ-3026-SM-5BC67
60-69 years, male
517.6
GTEX-145MH-3026-SM-5Q5DZ
50-59 years, male
512.2
GTEX-R55F-1326-SM-5S2V4
50-59 years, male
498.0
GTEX-ZE7O-3126-SM-5HL5X
50-59 years, female
492.7
GTEX-12126-1026-SM-5P9JJ
20-29 years, male
489.4
GTEX-ZYFD-3026-SM-5E44C
50-59 years, male
486.8
GTEX-OXRN-2426-SM-2I5EQ
50-59 years, male
476.4
GTEX-T2IS-3026-SM-32QPM
20-29 years, female
471.8
GTEX-ZUA1-3026-SM-59HJC
40-49 years, male
469.8
GTEX-1313W-3126-SM-5LZUI
50-59 years, female
467.0
GTEX-13OW7-3026-SM-5L3GY
50-59 years, male
464.0
GTEX-11DXY-3226-SM-5GIDE
60-69 years, male
461.9
GTEX-145MF-2726-SM-5O995
50-59 years, male
456.9
GTEX-11GSO-2926-SM-5HL73
60-69 years, male
456.5
GTEX-13FLW-1426-SM-5K7YE
50-59 years, male
455.4
GTEX-14BMV-3026-SM-5S2PQ
50-59 years, male
454.4
GTEX-WVLH-3026-SM-3MJG9
50-59 years, male
450.9
GTEX-12WSC-3026-SM-5GCNF
50-59 years, male
450.3
GTEX-XOTO-3026-SM-4B65M
50-59 years, male
450.3
GTEX-13VXU-2926-SM-5LU5C
50-59 years, male
445.1
GTEX-14ASI-3026-SM-5S2PN
60-69 years, male
444.7
GTEX-131YS-3126-SM-5KLYT
60-69 years, female
444.3
GTEX-13OVH-3026-SM-5MR4N
70-79 years, male
442.7
GTEX-11DXW-1126-SM-5H12Q
40-49 years, male
441.8
GTEX-RNOR-2326-SM-2TF4I
50-59 years, female
439.9
GTEX-11ONC-2926-SM-5P9JM
60-69 years, male
437.0
GTEX-YFC4-3126-SM-5PNV6
40-49 years, female
436.8
GTEX-132Q8-3026-SM-5PNVG
60-69 years, male
436.6
GTEX-QMR6-1426-SM-32PLA
50-59 years, male
422.7
GTEX-TSE9-3026-SM-3DB76
60-69 years, female
415.2
GTEX-Q2AG-2926-SM-2HMJ3
40-49 years, female
414.2
GTEX-WZTO-2926-SM-3NM9I
40-49 years, male
412.9
GTEX-145MG-3026-SM-5RQJA
50-59 years, male
400.8
GTEX-11NUK-2926-SM-5A5MD
50-59 years, male
396.9
GTEX-12ZZY-3026-SM-5GCOU
60-69 years, male
395.8
GTEX-12WSH-3026-SM-5CVNI
50-59 years, male
390.0
GTEX-WHSE-3026-SM-3P5ZH
20-29 years, male
388.5
GTEX-13OW8-2826-SM-5L3GC
60-69 years, male
376.1
GTEX-11GS4-3126-SM-5A5LH
60-69 years, male
374.4
GTEX-111FC-3126-SM-5GZZ2
60-69 years, male
364.3
GTEX-13FXS-3126-SM-5J2NN
50-59 years, male
330.4
GTEX-13G51-3026-SM-5IJB8
60-69 years, male
306.2
GTEX-11O72-2926-SM-5BC4V
40-49 years, male
293.5
GTEX-11OF3-2926-SM-5HL78
60-69 years, male
89.3
Show all
Brain - Frontal Cortex (BA9) RPKM: 551.0
Samples: 108
Max RPKM: 1559.7
Min RPKM: 195.4
Std RPKM: 198.6
Median RPKM: 512.1
GTEX-13JVG-0011-R10b-SM-5KM2P
60-69 years, male
1559.7
GTEX-13JUV-0011-R10b-SM-5LZXR
40-49 years, female
979.8
GTEX-ZVT3-0011-R10b-SM-57WB6
60-69 years, female
957.3
GTEX-12WSA-0011-R10b-SM-5P9ET
60-69 years, male
951.5
GTEX-12ZZW-0011-R10b-SM-5HL9X
50-59 years, male
927.5
GTEX-13X6I-0011-R10a-SM-5PNWI
60-69 years, male
926.1
GTEX-1445S-0011-R10a-SM-5PNWB
60-69 years, male
899.1
GTEX-11GSP-0011-R10a-SM-5NQ7J
60-69 years, female
882.4
GTEX-11WQK-0011-R10a-SM-5BC6R
50-59 years, male
879.8
GTEX-Z93S-0011-R10a-SM-4RGNM
50-59 years, male
877.4
GTEX-13SLW-0011-R10a-SM-5S2UI
70-79 years, male
873.4
GTEX-1477Z-0011-R10b-SM-5S2RF
60-69 years, male
840.9
GTEX-13G51-0011-R10b-SM-5LZYF
60-69 years, male
792.6
GTEX-11WQC-0011-R10a-SM-57WCT
60-69 years, male
784.5
GTEX-N7MS-0011-R10A-SM-2HMJK
60-69 years, male
758.7
GTEX-ZXG5-0011-R10a-SM-57WDD
60-69 years, male
747.3
GTEX-13NYB-0011-R10a-SM-5KM43
40-49 years, male
745.8
GTEX-X4XX-0011-R10B-SM-46MWO
60-69 years, male
742.3
GTEX-145LS-0011-R10a-SM-5PNUQ
60-69 years, female
737.8
GTEX-XMD1-0011-R10A-SM-4AT4A
60-69 years, male
731.5
GTEX-X585-0011-R10A-SM-46MUY
50-59 years, male
703.3
GTEX-YJ89-0011-R10a-SM-4SOK9
60-69 years, male
699.8
GTEX-13OVJ-0011-R10b-SM-5L3HT
50-59 years, female
690.6
GTEX-139TS-0011-R10a-SM-5K7TU
60-69 years, male
673.8
GTEX-13QIC-0011-R10a-SM-5O9C7
60-69 years, female
660.2
GTEX-QVJO-0011-R10A-SM-2S1QJ
60-69 years, female
648.7
GTEX-TSE9-0011-R10A-SM-3DB7O
60-69 years, female
636.8
GTEX-13FHO-0011-R10b-SM-5J2MM
60-69 years, male
636.5
GTEX-ZE7O-0011-R10a-SM-57WAZ
50-59 years, female
635.8
GTEX-NL4W-0011-R10A-SM-2I3DY
50-59 years, male
618.7
GTEX-131XH-0011-R10a-SM-5EGLJ
50-59 years, male
614.6
GTEX-X4EP-0011-R10B-SM-4QASJ
60-69 years, female
613.5
GTEX-13NZA-0011-R10b-SM-5KM54
60-69 years, male
612.5
GTEX-N7MT-0011-R10A-SM-2I3E1
60-69 years, female
596.3
GTEX-NL3H-0011-R10A-SM-2I3E9
60-69 years, male
591.0
GTEX-13OW6-0011-R10a-SM-5L3HE
50-59 years, male
588.6
GTEX-12ZZZ-0011-R10a-SM-5P9HC
60-69 years, male
584.8
GTEX-13FLV-0011-R10b-SM-5LZZ2
50-59 years, male
583.8
GTEX-OXRN-0011-R10A-SM-2I5GC
50-59 years, male
575.0
GTEX-12WSD-0011-R10b-SM-5GU79
60-69 years, female
564.6
GTEX-13X6J-0011-R10b-SM-5PNWA
50-59 years, male
559.2
GTEX-QMR6-0011-R10A-SM-32PKO
50-59 years, male
545.2
GTEX-P44H-0011-R10A-SM-2XCEK
40-49 years, male
545.0
GTEX-NPJ8-0011-R10A-SM-2YUMO
40-49 years, male
543.4
GTEX-147F4-0011-R10b-SM-5S2WC
50-59 years, male
539.6
GTEX-12WSF-0011-R10a-SM-5LZVH
70-79 years, male
531.3
GTEX-T6MN-0011-R10A-SM-32QP7
50-59 years, male
528.1
GTEX-13S7M-0011-R10b-SM-5PNZB
60-69 years, female
524.1
GTEX-WL46-0011-R10A-SM-3MJFQ
50-59 years, male
520.6
GTEX-11H98-0011-R10b-SM-5NQ98
50-59 years, male
519.6
GTEX-ZF28-0011-R10a-SM-4WWEH
60-69 years, male
518.8
GTEX-ZDXO-0011-R10a-SM-4WWD8
60-69 years, male
517.7
GTEX-ZUA1-0011-R10a-SM-51MT6
40-49 years, male
517.4
GTEX-145MH-0011-R10b-SM-5PNUK
50-59 years, male
514.4
GTEX-QVUS-0011-R10A-SM-3GIK3
60-69 years, female
509.8
GTEX-Y8DK-0011-R10A-SM-4SOK1
60-69 years, male
505.0
GTEX-WZTO-0011-R10B-SM-4E3KB
40-49 years, male
499.2
GTEX-13FXS-0011-R10a-SM-5J2MA
50-59 years, male
485.6
GTEX-ZAB4-0011-R10a-SM-4SOKH
40-49 years, male
484.3
GTEX-13OW8-0011-R10a-SM-5L3H6
60-69 years, male
478.4
GTEX-T5JC-0011-R10A-SM-32PM2
20-29 years, male
477.9
GTEX-12ZZX-0011-R10b-SM-5DUWK
40-49 years, female
473.3
GTEX-13IVO-0011-R10a-SM-5LZY3
70-79 years, male
466.3
GTEX-131YS-0011-R10b-SM-5EQ5N
60-69 years, female
462.8
GTEX-XLM4-0011-R10A-SM-4AT5P
60-69 years, male
461.9
GTEX-13N2G-0011-R10a-SM-5MR34
60-69 years, male
459.3
GTEX-145LU-0011-R10a-SM-5PNWJ
50-59 years, male
458.8
GTEX-13OVL-0011-R10a-SM-5L3GS
50-59 years, male
456.5
GTEX-13QJC-0011-R10a-SM-5SI63
60-69 years, female
450.0
GTEX-12WSM-0011-R10a-SM-5DUWV
60-69 years, male
447.8
GTEX-ZVZQ-0011-R10b-SM-51MRT
60-69 years, female
447.5
GTEX-NPJ7-0011-R10A-SM-2I3E5
60-69 years, female
438.8
GTEX-12WSE-0011-R10b-SM-5P9JV
20-29 years, male
435.7
GTEX-12ZZY-0011-R10b-SM-5HL7W
60-69 years, male
434.0
GTEX-147GR-0011-R10b-SM-5S2UM
60-69 years, male
431.9
GTEX-12126-0011-R10b-SM-5BC6T
20-29 years, male
431.4
GTEX-ZV68-0011-R10a-SM-51MT7
50-59 years, female
426.9
GTEX-X261-0011-R10B-SM-4E3JT
50-59 years, male
423.1
GTEX-Q2AG-0011-R10A-SM-2HMLA
40-49 years, female
422.8
GTEX-13FTZ-0011-R10b-SM-5KLZS
60-69 years, male
415.6
GTEX-12WSC-0011-R10a-SM-5GU57
50-59 years, male
409.7
GTEX-S7SE-0011-R10A-SM-2XCDF
50-59 years, male
407.2
GTEX-14753-0011-R10b-SM-5S2WE
60-69 years, male
406.3
GTEX-WVLH-0011-R10A-SM-3MJFM
50-59 years, male
403.3
GTEX-13SLX-0011-R10a-SM-5P9HV
50-59 years, female
399.5
GTEX-RVPU-0011-R10A-SM-2XCAH
50-59 years, male
398.9
GTEX-132Q8-0011-R10b-SM-5DUWZ
60-69 years, male
393.6
GTEX-145MG-0011-R10a-SM-5PNWG
50-59 years, male
390.5
GTEX-13RTJ-0011-R10b-SM-5O9CW
60-69 years, male
389.9
GTEX-13O3Q-0011-R10b-SM-5KM39
50-59 years, male
382.9
GTEX-1313W-0011-R10b-SM-5DUXA
50-59 years, female
379.9
GTEX-13FLW-0011-R10b-SM-5LZZF
50-59 years, male
379.7
GTEX-YFC4-0011-R10a-SM-4SOK5
40-49 years, female
374.7
GTEX-13O3O-0011-R10a-SM-5LUA9
60-69 years, female
371.7
GTEX-QDT8-0011-R10A-SM-32PKG
30-39 years, female
358.4
GTEX-11ZUS-0011-R10b-SM-5BC79
30-39 years, male
358.0
GTEX-13X6K-0011-R10a-SM-5P9JR
60-69 years, female
357.3
GTEX-13N1W-0011-R10b-SM-5MR4H
70-79 years, male
348.4
GTEX-13CZV-0011-R10b-SM-5LZYD
60-69 years, male
341.2
GTEX-14BIL-0011-R10a-SM-5SI75
50-59 years, male
337.3
GTEX-14ASI-0011-R10b-SM-5S2VZ
60-69 years, male
336.1
GTEX-13OW7-0011-R10a-SM-5L3H3
50-59 years, male
335.5
GTEX-12WSH-0011-R10a-SM-5LZUS
50-59 years, male
335.2
GTEX-13NYS-0011-R10a-SM-5MR4S
60-69 years, male
334.0
GTEX-WWYW-0011-R10A-SM-3NB35
50-59 years, female
333.0
GTEX-14BIN-0011-R10a-SM-5S2UA
50-59 years, female
332.8
GTEX-OXRO-0011-R10A-SM-2I5EH
60-69 years, female
281.6
GTEX-131XW-0011-R10a-SM-5DUVA
50-59 years, female
195.4
Show all
CEREBRAL CORTEX - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.