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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in tubules: 60 Cells in glomeruli: 20 Fibroblasts: 5 Other cell types: 15
Female, age 67
Sample 2 TPM: 317.8
Cell types%
Cells in tubules: 70 Cells in glomeruli: 15 Fibroblasts: 10 Other cell types: 5
Female, age 55
Sample 3 TPM: 294
Cell types%
Cells in tubules: 80 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 5
Male, age 46
Sample 4 TPM: 305.7
Cell types%
Cells in tubules: 60 Cells in glomeruli: 25 Fibroblasts: 5 Other cell types: 10
Female, age 57
Sample 5 TPM: 358.3
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 6 TPM: 466.5
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 20
Male, age 73
Sample 7 TPM: 563
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Female, age 59
Sample 8 TPM: 380.6
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 15
Female, age 48
Sample 9 TPM: 463.6
Cell types%
Cells in tubules: 60 Cells in glomeruli: 5 Fibroblasts: 10 Other cell types: 25
KIDNEY - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 104.7
Min RPKM: 12.8
Std RPKM: 21.0
Median RPKM: 39.7
GTEX-13NYB-1726-SM-5N9G2
40-49 years, male
104.7
GTEX-N7MS-1626-SM-3LK5F
60-69 years, male
99.8
GTEX-ZYT6-2226-SM-5GIC9
30-39 years, male
73.1
GTEX-1497J-0826-SM-5NQAJ
60-69 years, male
63.9
GTEX-12696-0926-SM-5FQTV
60-69 years, male
63.7
GTEX-ZYFG-1626-SM-5GZYY
60-69 years, female
60.3
GTEX-QDVN-1626-SM-48TZC
50-59 years, male
60.0
GTEX-QLQW-1626-SM-4R1K1
30-39 years, male
59.2
GTEX-145MN-0326-SM-5QGQI
30-39 years, male
58.6
GTEX-UPIC-1126-SM-4IHLO
20-29 years, female
55.1
GTEX-XPVG-0526-SM-4B65N
50-59 years, male
53.1
GTEX-Y5V6-2026-SM-5IFHO
60-69 years, male
46.3
GTEX-11OF3-1326-SM-5N9FJ
60-69 years, male
44.5
GTEX-12WSG-0826-SM-5EQ5A
50-59 years, female
41.2
GTEX-13RTJ-2226-SM-5S2Q1
60-69 years, male
41.0
GTEX-T5JC-1526-SM-4DM68
20-29 years, male
39.7
GTEX-13OVL-1826-SM-5KLZR
50-59 years, male
39.6
GTEX-ZVZP-0926-SM-5GIDB
50-59 years, male
38.8
GTEX-ZLFU-0926-SM-5P9F8
40-49 years, male
35.2
GTEX-13OW6-1826-SM-5N9F9
50-59 years, male
33.4
GTEX-ZC5H-1726-SM-5HL7X
40-49 years, female
32.0
GTEX-11GS4-2326-SM-5A5KS
60-69 years, male
31.2
GTEX-13112-2126-SM-5GCO4
50-59 years, male
30.6
GTEX-1399S-0526-SM-5IJG8
30-39 years, female
28.7
GTEX-13OVI-1126-SM-5KLZF
60-69 years, female
28.1
GTEX-11TTK-1926-SM-5PNW8
60-69 years, female
27.4
GTEX-P4QS-1126-SM-3NMD5
60-69 years, male
26.8
GTEX-147F4-2626-SM-5Q5CS
50-59 years, male
25.6
GTEX-13O1R-2526-SM-5N9FW
60-69 years, male
24.6
GTEX-NPJ8-2226-SM-3TW8D
40-49 years, male
22.3
GTEX-RN64-1626-SM-48FD7
50-59 years, male
19.6
GTEX-ZYFD-1526-SM-5NQ7T
50-59 years, male
12.8
Show all
KIDNEY - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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