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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 230.2
Min RPKM: 41.2
Std RPKM: 35.8
Median RPKM: 100.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
230.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
218.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
184.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
183.0
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
182.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
175.7
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
175.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
158.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
155.3
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
154.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
154.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
152.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
151.3
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
150.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
147.9
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
145.9
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
141.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
138.2
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
136.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
132.4
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
130.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
129.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
128.2
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
127.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
126.6
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
122.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
121.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
121.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
121.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
120.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
118.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
117.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
117.4
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
114.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
114.1
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
113.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
113.5
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
110.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
110.5
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
110.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
108.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
103.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
102.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
102.6
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
101.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
101.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
101.2
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
100.6
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
99.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
98.5
GTEX-S341-1226-SM-4AD5S
40-49 years, female
98.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
97.9
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
96.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
96.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
95.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
95.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
94.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
94.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
93.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
91.7
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
91.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
91.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
90.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
90.2
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
89.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
87.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
87.1
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
86.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
85.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
84.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
83.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
83.2
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
81.7
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
80.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
79.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
78.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
78.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
77.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
77.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
76.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
74.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
71.7
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
71.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
71.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
70.8
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
69.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
67.5
GTEX-QCQG-1226-SM-48U23
50-59 years, female
66.9
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
65.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
65.7
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
63.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
62.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
57.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
56.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
54.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
41.2
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.