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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 216.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 679.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 264.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 209.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 277.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 322
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 163.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 289
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 282.6
Min RPKM: 17.2
Std RPKM: 60.4
Median RPKM: 107.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
282.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
269.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
255.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
247.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
235.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
226.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
223.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
221.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
216.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
215.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
215.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
212.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
209.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
205.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
198.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
193.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
185.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
182.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
181.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
180.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
178.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
173.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
172.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
170.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
170.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
165.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
162.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
160.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
160.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
159.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
155.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
153.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
153.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
152.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
139.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
139.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
138.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
137.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
135.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
133.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
131.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
128.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
127.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
126.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
125.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
124.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
123.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
121.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
120.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
114.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
114.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
113.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
113.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
112.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
110.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
110.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
110.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
110.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
110.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
107.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
106.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
106.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
105.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
104.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
102.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
99.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
97.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
96.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
95.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
95.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
92.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
91.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
90.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
89.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
87.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
86.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
86.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
85.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
84.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
84.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
84.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
83.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
83.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
82.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
80.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
79.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
77.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
74.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
73.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
71.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
70.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
69.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
68.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
66.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
65.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
65.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
63.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
62.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
62.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
59.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
55.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
52.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
48.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
46.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
45.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
42.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
39.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
38.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
38.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
38.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
37.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
32.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
30.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
26.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
25.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
22.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
21.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
18.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
17.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.