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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 921.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1216.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 916.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1575.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1305.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 785.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 960.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1545.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 508.5
Min RPKM: 26.6
Std RPKM: 99.0
Median RPKM: 147.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
508.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
431.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
426.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
417.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
400.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
386.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
380.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
376.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
354.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
331.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
318.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
313.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
305.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
299.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
289.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
287.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
285.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
274.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
269.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
265.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
263.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
262.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
257.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
253.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
252.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
249.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
247.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
240.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
240.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
231.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
229.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
229.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
228.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
227.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
226.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
221.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
219.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
216.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
212.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
211.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
208.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
205.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
201.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
200.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
189.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
189.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
182.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
180.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
180.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
179.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
178.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
176.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
174.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
160.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
156.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
154.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
154.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
148.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
148.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
147.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
141.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
141.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
138.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
138.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
136.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
135.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
135.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
134.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
134.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
133.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
133.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
132.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
130.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
129.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
127.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
125.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
124.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
123.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
122.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
122.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
121.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
118.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
116.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
113.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
111.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
111.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
110.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
110.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
106.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
105.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
100.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
100.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
100.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
97.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
95.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
95.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
93.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
93.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
91.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
86.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
83.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
82.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
77.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
72.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
71.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
69.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
64.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
64.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
59.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
58.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
58.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
56.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
51.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
44.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
44.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
40.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
33.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
30.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
26.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.