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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 228.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 188.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 106.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 222.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 211.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 179
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 154.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 300.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1155.7
Min RPKM: 0.3
Std RPKM: 201.5
Median RPKM: 57.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1155.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
1131.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1020.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
898.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
588.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
448.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
396.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
322.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
318.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
300.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
254.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
253.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
249.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
233.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
217.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
210.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
208.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
204.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
196.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
196.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
195.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
193.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
188.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
180.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
173.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
159.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
157.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
155.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
150.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
146.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
145.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
143.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
138.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
131.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
130.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
126.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
121.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
120.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
107.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
105.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
102.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
100.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
99.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
94.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
93.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
89.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
89.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
88.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
82.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
80.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
79.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
77.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
74.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
73.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
71.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
64.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
63.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
59.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
59.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
57.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
54.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
52.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
51.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
51.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
45.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
40.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
40.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
40.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
37.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
37.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
36.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
33.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
32.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
30.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
27.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
27.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
25.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
24.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
23.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
19.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
18.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
16.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
16.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
15.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
15.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
15.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
13.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
13.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
13.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
13.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
12.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
12.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
11.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
11.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
11.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
11.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
8.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
6.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
6.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
6.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
5.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
5.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
5.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
5.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
5.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
4.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
4.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
4.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
3.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
3.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
3.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
2.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
0.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
0.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.