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COLON - Expression summary
RNA expressioni
HPA:28.6TPM
GTEx:12.0RPKM
FANTOM5:68.8Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 28.6
overview Male, age 54 Sample 1
TPM: 31.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 24.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 25.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 28.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 24.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 29.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 26.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 28.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 29
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 35.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 30.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 23.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 12.0
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 12.4
Samples: 149

Max RPKM: 17.8
Min RPKM: 6.6
Std RPKM: 1.8
Median RPKM: 12.2
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 17.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 16.7
GTEX-145LS-2926-SM-5O99G 60-69 years, female 16.4
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 16.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 16.1
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 16.1
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 15.5
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 15.4
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 15.3
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 15.2
Show all
Colon - Transverse
RPKM: 11.8
Samples: 196

Max RPKM: 20.7
Min RPKM: 6.4
Std RPKM: 2.3
Median RPKM: 11.5
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 20.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 17.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 17.7
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 17.3
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 17.3
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 17.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 17.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 17.0
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 16.6
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 16.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 68.8
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 65.0
FF:10014-101C5 62,83,84 years, mixed 68.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.