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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 626.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 529.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 363.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 650.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 738.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 827
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 634.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1276.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 996.4
Min RPKM: 74.9
Std RPKM: 173.9
Median RPKM: 400.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
996.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
824.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
823.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
764.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
732.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
713.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
706.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
696.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
677.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
669.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
658.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
650.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
650.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
645.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
644.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
619.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
611.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
605.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
601.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
593.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
591.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
586.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
583.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
576.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
562.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
560.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
559.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
550.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
544.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
539.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
530.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
525.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
517.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
509.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
505.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
503.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
481.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
473.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
469.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
467.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
463.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
462.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
462.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
462.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
460.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
445.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
443.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
436.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
436.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
434.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
433.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
432.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
432.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
427.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
417.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
415.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
411.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
409.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
401.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
400.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
397.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
395.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
395.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
390.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
390.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
384.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
384.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
383.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
383.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
381.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
374.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
363.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
360.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
359.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
357.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
355.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
348.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
348.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
345.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
342.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
329.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
327.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
325.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
323.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
322.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
321.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
313.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
307.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
297.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
282.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
281.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
280.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
272.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
268.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
264.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
263.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
252.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
251.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
249.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
245.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
237.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
236.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
233.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
232.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
219.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
199.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
196.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
196.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
191.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
180.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
167.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
163.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
151.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
144.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
142.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
138.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
94.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
80.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
74.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.