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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1935.8
Min RPKM: 233.6
Std RPKM: 262.0
Median RPKM: 522.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1935.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1227.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
1159.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
1032.8
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
1004.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
942.5
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
913.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
909.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
907.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
885.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
882.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
882.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
872.0
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
859.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
843.8
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
802.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
794.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
787.7
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
758.3
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
735.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
728.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
723.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
684.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
674.8
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
668.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
663.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
651.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
645.0
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
636.5
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
622.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
617.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
616.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
611.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
596.9
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
587.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
577.9
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
574.5
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
570.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
561.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
558.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
556.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
555.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
539.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
531.8
GTEX-11I78-2026-SM-5987C
50-59 years, female
531.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
530.7
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
526.0
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
524.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
519.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
512.8
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
512.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
497.1
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
493.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
483.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
475.0
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
471.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
468.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
461.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
460.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
459.9
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
456.7
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
453.5
GTEX-QCQG-1226-SM-48U23
50-59 years, female
452.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
449.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
444.7
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
440.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
421.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
402.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
398.9
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
393.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
377.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
370.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
367.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
364.2
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
355.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
343.8
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
340.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
330.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
330.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
329.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
324.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
320.7
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
305.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
290.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
287.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
282.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
279.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
274.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
269.9
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
268.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
268.6
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
264.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
249.1
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
243.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
237.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
233.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.