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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 696.0
Min RPKM: 126.3
Std RPKM: 90.9
Median RPKM: 264.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
696.0
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
620.2
GTEX-1192X-2526-SM-59868
50-59 years, male
455.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
449.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
435.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
429.4
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
412.0
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
403.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
390.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
367.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
361.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
350.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
350.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
344.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
338.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
329.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
328.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
323.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
322.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
321.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
319.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
319.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
318.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
317.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
315.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
312.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
307.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
307.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
303.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
301.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
300.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
299.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
296.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
293.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
291.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
286.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
285.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
283.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
282.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
280.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
273.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
269.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
265.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
265.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
263.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
263.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
261.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
258.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
258.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
255.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
250.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
250.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
249.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
248.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
248.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
245.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
245.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
242.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
241.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
239.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
238.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
238.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
237.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
237.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
236.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
227.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
226.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
222.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
219.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
206.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
205.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
205.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
204.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
203.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
202.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
201.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
194.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
189.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
187.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
185.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
179.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
178.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
168.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
165.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
155.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
143.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
137.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
126.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.