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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 590.6
Min RPKM: 99.5
Std RPKM: 88.7
Median RPKM: 216.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
590.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
505.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
425.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
422.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
419.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
397.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
396.3
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
373.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
362.2
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
352.7
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
344.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
318.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
315.2
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
311.3
GTEX-11I78-2026-SM-5987C
50-59 years, female
308.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
300.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
296.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
290.1
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
289.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
285.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
285.0
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
280.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
276.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
276.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
275.7
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
272.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
271.6
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
269.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
268.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
268.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
266.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
264.3
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
262.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
259.6
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
258.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
255.6
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
253.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
252.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
251.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
251.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
250.0
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
239.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
234.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
233.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
231.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
224.7
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
220.5
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
218.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
215.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
205.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
202.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
202.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
201.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
201.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
199.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
198.1
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
195.4
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
194.2
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
189.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
188.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
188.1
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
182.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
180.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
177.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
176.2
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
175.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
173.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
171.1
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
170.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
169.9
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
169.7
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
168.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
167.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
166.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
164.0
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
163.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
162.7
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
162.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
156.1
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
155.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
154.5
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
153.9
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
149.4
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
149.3
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
145.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
144.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
144.3
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
139.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
132.2
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
129.8
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
118.5
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
118.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
116.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
112.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
109.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
99.5
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.