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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 476.7
Min RPKM: 5.8
Std RPKM: 80.8
Median RPKM: 107.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
476.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
395.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
325.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
259.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
253.5
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
252.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
238.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
226.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
221.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
208.2
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
206.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
200.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
186.6
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
186.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
184.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
184.4
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
183.2
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
181.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
177.2
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
174.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
173.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
167.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
160.9
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
158.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
148.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
147.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
145.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
143.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
140.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
139.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
138.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
137.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
136.5
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
134.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
134.1
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
132.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
132.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
131.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
125.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
115.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
115.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
115.0
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
110.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
109.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
109.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
109.4
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
109.1
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
108.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
105.3
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
104.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
101.0
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
100.1
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
97.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
95.9
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
94.0
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
91.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
89.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
86.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
84.1
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
80.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
79.8
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
72.3
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
71.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
69.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
68.9
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
67.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
66.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
63.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
63.1
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
61.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
61.7
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
60.2
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
59.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
56.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
54.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
50.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
47.9
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
46.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
43.3
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
42.7
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
41.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
38.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
37.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
35.4
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
32.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
31.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
30.9
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
28.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
25.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
23.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
22.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
18.3
GTEX-11I78-2026-SM-5987C
50-59 years, female
17.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
14.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
12.2
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
5.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.