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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 447.1
Min RPKM: 137.9
Std RPKM: 53.9
Median RPKM: 219.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
447.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
382.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
362.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
355.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
324.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
320.6
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
317.4
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
294.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
294.3
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
289.1
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
284.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
280.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
279.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
275.8
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
270.3
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
269.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
267.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
265.6
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
260.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
260.0
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
259.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
259.7
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
256.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
256.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
255.2
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
253.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
253.1
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
251.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
250.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
249.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
249.0
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
245.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
244.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
243.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
241.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
236.7
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
236.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
234.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
232.5
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
231.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
231.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
231.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
230.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
226.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
224.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
224.5
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
222.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
220.1
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
218.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
218.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
217.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
216.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
215.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
214.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
209.0
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
208.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
206.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
204.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
204.0
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
203.6
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
199.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
198.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
198.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
197.9
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
196.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
195.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
194.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
194.0
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
193.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
193.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
192.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
190.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
188.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
187.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
186.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
185.5
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
184.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
181.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
181.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
179.7
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
179.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
176.5
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
175.2
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
172.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
169.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
167.5
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
167.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
165.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
161.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
156.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
155.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
152.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
149.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
148.5
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
142.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
137.9
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.