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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 351.4
Min RPKM: 73.7
Std RPKM: 58.4
Median RPKM: 158.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
351.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
302.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
296.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
292.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
289.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
279.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
275.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
273.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
271.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
262.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
257.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
247.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
241.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
239.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
236.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
234.6
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
223.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
222.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
219.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
218.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
217.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
209.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
208.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
206.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
205.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
204.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
202.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
202.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
200.7
GTEX-1192X-2526-SM-59868
50-59 years, male
197.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
193.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
190.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
179.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
179.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
177.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
177.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
174.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
173.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
171.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
164.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
161.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
161.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
161.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
159.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
156.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
154.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
153.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
153.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
151.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
150.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
148.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
148.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
148.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
147.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
146.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
145.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
144.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
144.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
144.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
144.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
143.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
143.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
141.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
137.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
136.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
132.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
130.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
129.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
127.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
126.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
125.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
123.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
120.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
120.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
119.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
119.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
116.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
115.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
113.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
112.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
112.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
98.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
92.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
91.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
91.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
89.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
81.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
73.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.