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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 521.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 450
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 400
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 540.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 465.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 411.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 370.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 690.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 279.7
Min RPKM: 49.0
Std RPKM: 49.1
Median RPKM: 146.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
279.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
262.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
257.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
248.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
246.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
233.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
230.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
227.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
225.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
223.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
219.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
214.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
212.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
205.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
197.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
197.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
196.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
192.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
191.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
191.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
189.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
188.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
186.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
186.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
186.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
185.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
183.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
182.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
181.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
181.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
181.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
172.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
172.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
172.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
171.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
171.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
171.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
170.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
167.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
166.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
166.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
166.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
160.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
158.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
155.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
155.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
154.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
154.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
154.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
153.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
152.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
151.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
151.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
151.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
151.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
150.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
149.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
148.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
146.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
146.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
146.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
145.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
142.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
141.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
141.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
139.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
138.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
136.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
136.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
136.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
132.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
129.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
128.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
128.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
127.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
125.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
122.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
121.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
121.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
121.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
120.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
119.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
119.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
117.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
116.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
113.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
111.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
110.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
109.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
108.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
106.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
105.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
104.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
104.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
104.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
103.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
102.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
102.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
100.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
99.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
99.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
95.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
91.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
90.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
89.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
86.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
76.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
74.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
74.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
70.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
69.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
69.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
67.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
67.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
66.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
63.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
63.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
58.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
49.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.